Dear Lori,
Thank you for your message. I was about to work on the corrections for the package.
The system changed a bit since last time I used it. It seems I first need to get credentials for git. I get an error message which I attached. Seems like my email address is not recognised as a valid email address of package maintainer. I add a second screenshot from the bioconductor website were the same address appears to be related to the package. How should I proceed?
Thank you very much in advance.
Best regards,
Evarist Planet
Chief Analyst at TronoLab
Laboratory of Virology and Genetics
EPFL
Phone +41 21 69 30940
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On 13 Dec 2019, at 15:45, Shepherd, Lori <Lori.Shepherd at RoswellPark.org> wrote:
This is your second warning. If the package is not fixed by the end of the month we will begin the deprecation process for your package.
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Shepherd, Lori
Sent: Monday, November 18, 2019 11:12 AM
To: evarist.planet at epfl.ch <evarist.planet at epfl.ch>
Subject: Bioconductor phenoTest
Please be advised your package is failing on all three platforms in devel 3.11
http://bioconductor.org/checkResults/devel/bioc-LATEST/phenoTest
The package SNPchip and HTSanalyzeR have been user requested deprecated in Bioconductor 3.10. You will have to alter your package to not utilize these packages to avoid your own package being deprecated. We made you aware of this deprecation back in May and the packages have had a deprecation since then as well.
Cheers,
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
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