Message-ID: <CAMomwMqqsCpB_UfAUU8mm+PjSFq8AZMTPionPqoUO=cwUJdCBw@mail.gmail.com>
Date: 2024-10-25T16:04:37Z
From: Martin Grigorov
Subject: [Bioc-devel] DeepTarget error built in Linux (openEuler 22.03 LTS-SP1) / aarch64
In-Reply-To: <CO6PR09MB76542384AE4C4F164BB81B10FE4F2@CO6PR09MB7654.namprd09.prod.outlook.com>
Hi,
This has been fixed earlier today.
It should be OK in the next run (tomorrow).
Regards,
Martin
On Fri, 25 Oct 2024 at 17:47, Nguyen, Trinh (NIH/NCI) [C] via Bioc-devel <
bioc-devel at r-project.org> wrote:
>
> Dear Developers,
>
> Could you please guide me what I should do? I received an error for the OS
> Linux (openEuler 22.03 LTS-SP1) / aarch64 as below:
>
> https://bioconductor.org/checkResults/3.20/bioc-LATEST/DeepTarget/palomino8-buildsrc.html
>
> * installing to library ?/home/biocbuild/R/R-4.4.1/site-library?
> * installing *source* package ?DeepTarget? ...
> ** using staged installation
> ** R
> ** data
> ** inst
> ** byte-compile and prepare package for lazy loading
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
> unable to load shared object
> '/home/biocbuild/R/R-4.4.1/site-library/BiocParallel/libs/BiocParallel.so':
> /usr/lib64/libstdc++.so.6: version `CXXABI_1.3.15' not found (required
> by /home/biocbuild/R/R-4.4.1/site-library/BiocParallel/libs/BiocParallel.so)
> Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam
> -> dyn.load
> Execution halted
> ERROR: lazy loading failed for package ?DeepTarget?
> * removing ?/home/biocbuild/R/R-4.4.1/site-library/DeepTarget?
> * restoring previous ?/home/biocbuild/R/R-4.4.1/site-library/DeepTarget?
>
>
> Thanks for your help.
>
> Best,
>
> Trinh
>
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>
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