[Bioc-devel] follow up on subject: mapping between original and reduced ranges
Hi Florian, Starting with IRanges 1.17.25 / GenomicRanges 1.11.23, reduce() supports the 'with.mapping' arg on IRanges, IRangesList, and GRanges objects (but not on GRangesList yet, could be added though). Make sure to check ?`inter-range-methods` for typical downstream manipulations of the mapping returned by reduce() when called with 'with.mapping=TRUE'. Let me know if you find problems with this or have suggestions. Thanks, H.
On 11/13/2012 05:44 PM, Herv? Pag?s wrote:
Hi Florian, This improvement to reduce() didn't make it in BioC 2.11. It has not been dropped from the agenda though: it's still on our list. Won't be before a couple of weeks though. Thanks for the reminder! H. On 11/09/2012 05:58 AM, Hahne, Florian wrote:
Hi Herve, a while ago I was asking about the possibility to store the reverse mapping in the resulting GRanges object after a reduce operation, and as far as I remember you agreed to put this on the to-do list for 2.11. I can't find any documentation about it in the man pages, and the code of the GenomicRanges reduce method looks unchanged. Has this been dropped from the agenda? Thanks, Florian
Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319