Message-ID: <CAOQ5NydY83yFCzLbWYm9r+E=Ky_2p0Md8u_H-q_CsagN207g=A@mail.gmail.com>
Date: 2016-07-06T14:13:20Z
From: Michael Lawrence
Subject: [Bioc-devel] GenomicsDB
Recently heard about GenomicsDB from Intel:
https://github.com/Intel-HLS/GenomicsDB/wiki
My understanding is that the upcoming GATK 4? will target it directly
for storing genotypes. It's based on the array-oriented database
TileDB, which I think distinguishes itself from e.g. SciDB by special
support for sparse data.
Seems TileDB might be a good candidate for a DelayedArray backend. But
I guess we would to represent it as an entire
SummarizedExperiment/VCF.
Thoughts?
Michael