[Bioc-devel] Git pushing problems for data package
Hi Tim, I've standardized your user name across your packages. Firstly, please check https://git.bioconductor.org/BiocCredentials/permissions_by_user/, And tell me what you see? Nitesh ?On 11/18/19, 5:27 AM, "Bioc-devel on behalf of Turaga, Nitesh" <bioc-devel-bounces at r-project.org on behalf of Nitesh.Turaga at RoswellPark.org> wrote: Hi Tim, It seems like you may have had more than two usernames. I might have ended my search too early. I'll fix this. Just give me a little time. Best Nitesh -- Nitesh Turaga Senior Programmer Analyst Bioconductor core team Roswell Park
From: Tim Triche, Jr. <tim.triche at gmail.com>
Sent: Sunday, November 17, 2019 4:25:26 PM
To: Turaga, Nitesh <Nitesh.Turaga at RoswellPark.org>
Cc: Herv? Pag?s <Bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] Git pushing problems for data package
Sent: Sunday, November 17, 2019 4:25:26 PM
To: Turaga, Nitesh <Nitesh.Turaga at RoswellPark.org>
Cc: Herv? Pag?s <Bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] Git pushing problems for data package
Followup: I changed my github username associated with my email address to my actual GitHub username (I am thinking that we will need to update the maintainer email for `biscuiteer` and `biscuiteerData` as a result). However, the Bioconductor credentials checker indicates that I still don't have access to maintain the repositories that I am maintaining. So if you could counsel me on how to fix that, it would be awesome, because I've run out of ideas on my end :-/
Thanks so much!
--t
On Sun, Nov 17, 2019 at 4:19 PM Tim Triche, Jr. <tim.triche at gmail.com<mailto:tim.triche at gmail.com>> wrote:
This is suboptimal:
Email: tim.triche at gmail.com<mailto:tim.triche at gmail.com>
GitHub Username: jamorrison
As you might imagine, I am not Jacob and Jacob is not me. I'm wondering how this happened?
--t
On Sun, Nov 17, 2019 at 4:17 PM Tim Triche, Jr. <tim.triche at gmail.com<mailto:tim.triche at gmail.com>> wrote:
I went to the git login checker, and activated my (usual) maintainer address:
https://git.bioconductor.org/BiocCredentials/permissions_by_user/
This informed me that I have access (as tim.triche at gmail.com<mailto:tim.triche at gmail.com>) to:
'tim.triche at gmail.com<mailto:tim.triche at gmail.com>' has access to the following packages:
methylumi
methyAnalysis
So that doesn't seem like a good thing either. I'm getting progressively more confused the deeper I look :-/
--t
On Sun, Nov 17, 2019 at 3:46 PM Tim Triche, Jr. <tim.triche at gmail.com<mailto:tim.triche at gmail.com>> wrote:
Actually, it seems to have somehow got worse?!
$ cd MTseeker
$ git push upstream
FATAL: W any packages/MTseeker t.triche DENIED by fallthru
(or you mis-spelled the reponame)
fatal: Could not read from remote repository.
Please make sure you have the correct access rights
and the repository exists.
Now it seems as if all repositories are using t.triche for access somehow? Perhaps I have misconfigured something somewhere. I will look into this... but my github SSH keys are all for `ttriche` not `t.triche`.
--t
On Sun, Nov 17, 2019 at 3:21 PM Tim Triche, Jr. <tim.triche at gmail.com<mailto:tim.triche at gmail.com>> wrote:
Hi Nitesh,
I'm afraid that I am still getting the same problems today where it asks for authentication as "t.triche" instead of "ttriche". Could you check into this?
$ git clone git at github.com:trichelab/MTseekerData.git
$ cd MTseekerData
$ git remote add upstream git at git.bioconductor.org:packages/MTseekerData
$ git push upstream master
FATAL: W any packages/MTseekerData t.triche DENIED by fallthru
(or you mis-spelled the reponame)
fatal: Could not read from remote repository.
Please make sure you have the correct access rights
and the repository exists.
# OK, let's check:
$ git clone git at git.bioconductor.org:packages/MTseekerData MTseekerData.bioc
remote: Compressing objects: 100% (84/84), done.
remote: Total 165 (delta 82), reused 146 (delta 70)
Receiving objects: 100% (165/165), 9.93 MiB | 7.90 MiB/s, done.
Resolving deltas: 100% (82/82), done.
$ grep Version MTseekerData/DESCRIPTION
Version: 1.5.2
$ grep Version MTseekerData.bioc/DESCRIPTION
Version: 1.5.0
$ grep name ~/.gitconfig
name = ttriche
I'm out of ideas ...
--t
On Fri, Nov 15, 2019 at 11:09 AM Tim Triche, Jr. <tim.triche at gmail.com<mailto:tim.triche at gmail.com>> wrote:
Thanks Nitesh! Not sure how that happened but thanks for fixing it.
--t
> On Nov 15, 2019, at 7:56 AM, Turaga, Nitesh <Nitesh.Turaga at roswellpark.org<mailto:Nitesh.Turaga at roswellpark.org>> wrote:
>
> Hi Tim,
>
> That's because you have for some reason two different usernames with Bioconductor.
>
> I've corrected the issue. You are now universally "ttriche" only.
>
> You should have access now.
>
> Best
>
> Nitesh
>
>> On Nov 15, 2019, at 9:52 AM, Tim Triche, Jr. <tim.triche at gmail.com<mailto:tim.triche at gmail.com>> wrote:
>>
>> Hi all,
>>
>> How do I push changes to my MTseekerData package in git?
>>
>> I get the following error when I try to commit changes:
>>
>> tim at tim-ThinkPad-T470:~/Dropbox/MTseekerData$ git remote -v
>> origin git at github.com:trichelab/MTseekerData.git (fetch)
>> origin git at github.com:trichelab/MTseekerData.git (push)
>> upstream git at git.bioconductor.org:packages/MTseekerData (fetch)
>> upstream git at git.bioconductor.org:packages/MTseekerData (push)
>> tim at tim-ThinkPad-T470:~/Dropbox/MTseekerData$ git pull upstream master
>> From git.bioconductor.org:packages/MTseekerData
>> * branch master -> FETCH_HEAD
>> Already up to date.
>> tim at tim-ThinkPad-T470:~/Dropbox/MTseekerData$ git push upstream
>> FATAL: W any packages/MTseekerData t.triche DENIED by fallthru
>> (or you mis-spelled the reponame)
>> fatal: Could not read from remote repository.
>>
>> Please make sure you have the correct access rights
>> and the repository exists.
>>
>>
>> I do not get this problem when pushing to the MTseeker git repository.
>>
>> Thanks for any insights,
>>
>>
>> --t
>> [[alternative HTML version deleted]]
>>
>> _______________________________________________
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>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
>
>
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