[Bioc-devel] New features in genArise
The genArise package implement as a new feature in the GUI a swap analysis where a swap dye data file pair is the input. First, a flip dye consistency checking is performed using a 2 SD cut and removing spots with expression level inconsistency between this pair of swap dye replicates. Then a merged file is obtained where the merged intensities will be the geometric means of the swap dye replicates. After this you can perform the analysis as a single experiment.