[Bioc-devel] Bioconductor 3.15 is Released!
we investigated the issue and identified the cause. The recently accepted new packages should be available after the next build report posting. Sorry for the inconvenience Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Christian Arnold <chrarnold at web.de>
Sent: Thursday, April 28, 2022 7:56 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] Bioconductor 3.15 is Released!
Sent: Thursday, April 28, 2022 7:56 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] Bioconductor 3.15 is Released!
Hi, the package GRaNIE faces the same issue, and it built successfully before the deadlines (see https://secure-web.cisco.com/1ZElGk0dWxaMybf8b0q7Aa6bGn92fCTyEg2WiLaYE7xPX9_hqtULZ05jw5zwiwL23gyAmQEPXv6cmeiUNP97GfXM35NYvDg8Ujs2czImvxco-u9dX6rykplvPc--MKnJ09ZN64MAvJ5COMHdJnJznSvQvq0jH4H7jUaG9-eUEz5igETaZyEygkMHERiRyRXrQ5FMsQBOYDs6VRey3gJhZwI9gZGMtAVymVRcIUKNl16Nrwx-_as4540P5dCxZlrMal8wt8ZiAbZ_YR-tulUk8mhkXbxA5K8_-X2qysC5k8CN71VnMc-iamvtyPvdcHWTj/https%3A%2F%2Fgithub.com%2FBioconductor%2FContributions%2Fissues%2F2556). From my understanding, it should be included in the release cycle also, could someone check and explain please? Thanks! On 28/04/2022 04:37, Steve Pederson wrote: > Congrats to the team on getting everything done. I did notice a handful of > the packages announced in release 3.15 don't seem to have made it though. > For a subset of new packages, links in the official release page take me to > Bioconductor 3.16 (devel) and they don't install using > BiocManager::install('pkgname', version = '3.15'). Obviously two I have a > vested interest in are in this group (extraChIPs and sSNAPPY) but there > seem to be a few others such as as APL, DifferentialRegulation, ompBAM, > terraTCGAdata, vectraPolarisData which are included in the announcement, > but can't be installed. I also noticed that this group were very late > package inclusions having their Github Contributions iIssues closed only 5 > or so days ago. Have we missed something in our code, or is this just a > glitch that will resolve in the next day or so? > > If it's any help, I did manage a successful install using > BiocManager::install('pkgname', version = '3.16') > > Thanks again, > > Steve > > On Thu, 28 Apr 2022 at 06:56, Kern, Lori <Lori.Shepherd at roswellpark.org> > wrote: > >> Thanks to all developers and community members for contributing to the >> project! >> Please see the full release announcement: >> >> https://secure-web.cisco.com/1PYOTWQtcVIFISmjIke7k1WNFEkPhwn5P-8EuQE11jpBSJUP17heETbnBV2bPzW3_zsS4rv6oB2fqtu58g1ZjDlK0q2SOr_i0v46uFQnE_2F0oWLN2Eag1bDsa5E1IU-_0zNGFQ8ixayH5QW80qHTF5DxaGgYTLTjSlgcGo80bSND173-0N0Nzln5MMRgFH0nApKf-jECFzvRmDRo7_IJp9P7iAW-_Evwe7AQNPVR5NK5kdqmZBWk77nbe0LJcbPqHsIjPg1pDBSpjY7fVS1l5uR8ChHkuzmlIhOe3AuNS4lsWqBOS2etQCd3KIOftVje/https%3A%2F%2Fbioconductor.org%2Fnews%2Fbioc_3_15_release%2F >> >> >> Cheers, >> Sent on behalf of the Bioconductor Core Team >> >> >> >> >> This email message may contain legally privileged and/or confidential >> information. 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