Dear Bioconductor team,
I am trying to update a package we developed, HiCcompare.
https://bioconductor.org/packages/HiCcompare/. The package has been
successfully submitted previously. However, now `R CMD check` throws an
error:
E> Quitting from lines 426-427 (HiCcompare-vignette.Rmd)
E> Error: processing vignette 'HiCcompare-vignette.Rmd' failed with
diagnostics:
E> non-conformable arrays
E> --- failed re-building ?HiCcompare-vignette.Rmd?
Yet, If I knit the vignette manually, it builds. If I execute the code
manually, it works. If I install the package from Bioconductor, it also
works.
I'm working with this package using bioconductor/bioconductor_docker:devel.
But the strange behavior - vignette knits manually but fails in CMD check -
persists both in Docker container and on local R installation.
Please advise, where to troubleshoot next.
Thanks,
Mikhail
---
Mikhail Dozmorov, Ph.D., Blick scholar
Associate Professor, Department of Biostatistics
Affiliate, Department of Pathology
Virginia Commonwealth University
OCS #738, 830 E. Main St, RVA, 23298
E-mail: mikhail.dozmorov at vcuhealth.org
Phone: 804-827-2055
https://medschool.vcu.edu/expertise/detail.html?id=mdozmorov
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