[Bioc-devel] biocLite “no packages in repository” error
Hi Ashley, ----- Original Message -----
From: "Ashley Ng" <ang at wehi.EDU.AU> To: dtenenba at fhcrc.org Cc: bioc-devel at r-project.org Sent: Tuesday, April 15, 2014 3:04:23 AM Subject: biocLite ?no packages in repository? error Hi Dan I seem to getting a ?no packages in repository? biocLite error after installing R 3.10 and trying to upgrade packages:
source("http://bioconductor.org/biocLite.R")
Bioconductor version 2.14 (BiocInstaller 1.13.3), ?biocLite for help
biocLite()
Error: 'no packages in repository (no internet connection?)' while trying http://bioconductor.org/packages/2.14/bioc
sessionInfo()
R version 3.1.0 (2014-04-10) Platform: x86_64-apple-darwin13.1.0 (64-bit) locale: [1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] BiocInstaller_1.13.3 loaded via a namespace (and not attached): [1] tools_3.1.0
What is the result of the following command: library(BiocInstaller) biocinstallRepos() ? Dan
Cheers Ashley Ng Clinical Haematologist and Post Doctoral Fellow The Royal Melbourne Hospital The Walter and Eliza Hall Institute of Medical Research, Cancer and Haematology Division 1G Royal Parade Parkville, 3050 Melbourne, Australia
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