[Bioc-devel] biocViews - Spatial
I think this is an acceptable proposal. I will look at adding the biocViews to the devel version of Bioconductor for use. They should be available for use by early next week once the new version of the biocViews packages builds and propagates on the build system. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Lukas Weber <lukas.weber.edu at gmail.com>
Sent: Thursday, July 29, 2021 3:29 PM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Cc: Stephanie Hicks <shicks19 at jhu.edu>
Subject: [Bioc-devel] biocViews - Spatial
Sent: Thursday, July 29, 2021 3:29 PM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Cc: Stephanie Hicks <shicks19 at jhu.edu>
Subject: [Bioc-devel] biocViews - Spatial
Hi, I have a question about biocViews. Currently we are including packages for spatially resolved transcriptomics analysis in the SingleCell (and SingleCellData / SingleCellWorkflow) biocViews. Would it be possible to add a new biocViews for spatial data? We are likely to see a lot of new packages in this area in the coming years, so it could be useful to split them out from SingleCell. And if so, should we call it Spatial or SpatialTranscriptomics? (e.g. maybe having a more general Spatial would be better since this could also include spatial proteomics) So then I would imagine the following new biocViews, mirroring the current ones for SingleCell: - Spatial - SpatialData - SpatialWorkflow Do others have any views on this? Best regards, Lukas -- Lukas M. Weber, Ph.D. Postdoctoral Fellow Department of Biostatistics Johns Hopkins Bloomberg School of Public Health https://secure-web.cisco.com/10aorG4oGD4f2h4n5OS8ylJaxGAtMcxFS2Y2EFXjTrBSWAO3eyAIY1CE3LJ-weQNiZY9fyn47BjrGEtin5f0b4cQs-rzl2aETf6g_uYxTPWe_XcC8M6IF0izwGkVCx1allG9WDhfg3wzOIYi5VSLa4vGclgA2wwF3PMXdNh7G-Wb4tnecBRgJtrVvUsI_xl6g17F2aTvh9RHMwO0p4snxJsHL0FczcYtMiGxka305dfVi3j7D_b6bjXF4OK7qIqD3iU-9P-991pi8lfgVJ0_8UkoK2Jexb6VfT4VuLJYiy2umAKehzd40q6o7Yvf3NLBR/https%3A%2F%2Flmweber.org%2F [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://secure-web.cisco.com/14dB-6vo-yjA4gE4ATcRw9dPs6-1AEapEW0fdBECs5-3WWDUXwQxUCHMMPLV6UDp0Fkom2ly3a1hPSLJFa143v7CvKrPC7jBmTxlDHxid_m9AK22RHiJ5AX7FiFRj8gt5ue_0t82yZC-Uk31UHjkk-34TgJ9RHx28tBRxzjqsGY_1hurxPJd6FCO_nG8Ge5WfY5VTLVKDWuigOaLwl9x9-OWkCizyMoC3vda3SzmmwY6BxTPS7XOiVA8REaRA3lNnXTnR8xYWYkbWnYx03ga8jxWJa7J6rhD3qAE6f_l3PEEQ-W0bFc191KfcnuRW2AkB/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.