[Bioc-devel] Could not read from remote repository - Bioc-devel

Sun, May 3, 2020 7:37 PM #

Hi,

I am trying to follow the guideline to sync the existing repositories of my package scClassify, but I got the following error:


(base) 192-168-1-112:scClassify yingxinlin$ git fetch --all
Fetching origin

Nitesh Turaga

Mon, May 4, 2020 8:11 AM #

You must be using the wrong SSH key most likely. 

If you have R W access it means the key exists but when you try to "fetch" via git, it's using the wrong key. You can set up your config file if you identify which SSH key is correct. 

Your git remote is malformed(formatting), if you resend it to me, I can take a better look at it. 

Best,

Nitesh

?On 5/3/20, 10:37 PM, "Bioc-devel on behalf of Yingxin Lin" <bioc-devel-bounces at r-project.org on behalf of yingxin.lin at sydney.edu.au> wrote:

    Hi,

    I am trying to follow the guideline to sync the existing repositories of my package scClassify, but I got the following error:


    (base) 192-168-1-112:scClassify yingxinlin$ git fetch --all
    Fetching origin
    From https://github.com/SydneyBioX/scClassify
    * branch            master     -> FETCH_HEAD
    Fetching upstream
    FATAL: invalid repo name: 'packages/scClassify.git' -X -C -oForwardX11Timeout=596h -oXauthLocation=/opt/X11/bin/xauth -p 12022 localhost'
    fatal: Could not read from remote repository.

    Please make sure you have the correct access rights
    and the repository exists.
    error: Could not fetch upstream

    And I have checked ssh -T git at git.bioconductor.org<mailto:git at git.bioconductor.org>, which indicates that I have R and W access for scClassify. The ?~/.ssh/config? file is set as point 15 mentioned in https://www.bioconductor.org/developers/how-to/git/faq/.

    Below is my remote setting:
    (base) 192-168-1-112:scClassify yingxinlin$ git remote -v
    origin  https://github.com/SydneyBioX/scClassify.git (fetch)
    origin  https://github.com/SydneyBioX/scClassify.git (push)
    upstream        git at git.bioconductor.org<mailto:git at git.bioconductor.org>:packages/scClassify.git (fetch)
    upstream        git at git.bioconductor.org<mailto:git at git.bioconductor.org>:packages/scClassify.git (push)


    I am wondering if you could provide some suggestions on how I can resolve these issues. Thank you in advance!

    Best regards,
    Yingxin Lin




    _______________________________________________
    Bioc-devel at r-project.org mailing list
    https://stat.ethz.ch/mailman/listinfo/bioc-devel

Yingxin Lin

Mon, May 4, 2020 8:17 AM #

Dear Nitesh,

Thank you very much for the reply. I have attached my current config file and git remote screenshots. Hope this would help you to target the issues.

Best regards,
Yingxin

?On 5/5/20, 1:11 am, "Nitesh Turaga" <nturaga.bioc at gmail.com> wrote:

You must be using the wrong SSH key most likely. 
    
    If you have R W access it means the key exists but when you try to "fetch" via git, it's using the wrong key. You can set up your config file if you identify which SSH key is correct. 
    
    Your git remote is malformed(formatting), if you resend it to me, I can take a better look at it. 
    
    Best,
    
    Nitesh

On 5/3/20, 10:37 PM, "Bioc-devel on behalf of Yingxin Lin" <bioc-devel-bounces at r-project.org on behalf of yingxin.lin at sydney.edu.au> wrote:

Hi,
    
        I am trying to follow the guideline to sync the existing repositories of my package scClassify, but I got the following error:
    
    
        (base) 192-168-1-112:scClassify yingxinlin$ git fetch --all
        Fetching origin
        From https://protect-au.mimecast.com/s/8eWKCJyBrGfl08WOfV8OXb?domain=github.com
        * branch            master     -> FETCH_HEAD
        Fetching upstream
        FATAL: invalid repo name: 'packages/scClassify.git' -X -C -oForwardX11Timeout=596h -oXauthLocation=/opt/X11/bin/xauth -p 12022 localhost'
        fatal: Could not read from remote repository.
    
        Please make sure you have the correct access rights
        and the repository exists.
        error: Could not fetch upstream
    
        And I have checked ssh -T git at git.bioconductor.org<mailto:git at git.bioconductor.org>, which indicates that I have R and W access for scClassify. The ?~/.ssh/config? file is set as point 15 mentioned in https://protect-au.mimecast.com/s/5HL2CK1DvKTP3qyKhvtk1Q?domain=bioconductor.org.
    
        Below is my remote setting:
        (base) 192-168-1-112:scClassify yingxinlin$ git remote -v
        origin  https://protect-au.mimecast.com/s/_IE6CL7EwMfVEPDqTPNDIl?domain=github.com (fetch)
        origin  https://protect-au.mimecast.com/s/_IE6CL7EwMfVEPDqTPNDIl?domain=github.com (push)
        upstream        git at git.bioconductor.org<mailto:git at git.bioconductor.org>:packages/scClassify.git (fetch)
        upstream        git at git.bioconductor.org<mailto:git at git.bioconductor.org>:packages/scClassify.git (push)
    
    
        I am wondering if you could provide some suggestions on how I can resolve these issues. Thank you in advance!
    
        Best regards,
        Yingxin Lin
    
    
    
    
        _______________________________________________
        Bioc-devel at r-project.org mailing list
        https://protect-au.mimecast.com/s/jX3NCMwGxOtDE5yPUW1VHA?domain=stat.ethz.ch
    


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Nitesh Turaga

Mon, May 4, 2020 8:20 AM #

Hi,

Everything looks fine. It's very unusual to see that you are getting RW permissions shown from `ssh -T` and you are not able to access your package. 

It could be a firewall / transient issue with your internet. But, just for the sake of it could you try adding another SSH key to your BiocCredentials account and then trying once again. 

Best,

Nitesh

?On 5/4/20, 11:17 AM, "Yingxin Lin" <yingxin.lin at sydney.edu.au> wrote:

Dear Nitesh,

    Thank you very much for the reply. I have attached my current config file and git remote screenshots. Hope this would help you to target the issues.

    Best regards,
    Yingxin

?On 5/5/20, 1:11 am, "Nitesh Turaga" <nturaga.bioc at gmail.com> wrote:

You must be using the wrong SSH key most likely. 

        If you have R W access it means the key exists but when you try to "fetch" via git, it's using the wrong key. You can set up your config file if you identify which SSH key is correct. 

        Your git remote is malformed(formatting), if you resend it to me, I can take a better look at it. 

        Best,

        Nitesh

On 5/3/20, 10:37 PM, "Bioc-devel on behalf of Yingxin Lin" <bioc-devel-bounces at r-project.org on behalf of yingxin.lin at sydney.edu.au> wrote:

Hi,

            I am trying to follow the guideline to sync the existing repositories of my package scClassify, but I got the following error:


            (base) 192-168-1-112:scClassify yingxinlin$ git fetch --all
            Fetching origin
            From https://github.com/SydneyBioX/scClassify
            * branch            master     -> FETCH_HEAD
            Fetching upstream
            FATAL: invalid repo name: 'packages/scClassify.git' -X -C -oForwardX11Timeout=596h -oXauthLocation=/opt/X11/bin/xauth -p 12022 localhost'
            fatal: Could not read from remote repository.

            Please make sure you have the correct access rights
            and the repository exists.
            error: Could not fetch upstream

            And I have checked ssh -T git at git.bioconductor.org<mailto:git at git.bioconductor.org>, which indicates that I have R and W access for scClassify. The ?~/.ssh/config? file is set as point 15 mentioned in https://www.bioconductor.org/developers/how-to/git/faq.

            Below is my remote setting:
            (base) 192-168-1-112:scClassify yingxinlin$ git remote -v
            origin  https://github.com/SydneyBioX/scClassify.git (fetch)
            origin  https://github.com/SydneyBioX/scClassify.git (push)
            upstream        git at git.bioconductor.org<mailto:git at git.bioconductor.org>:packages/scClassify.git (fetch)
            upstream        git at git.bioconductor.org<mailto:git at git.bioconductor.org>:packages/scClassify.git (push)


            I am wondering if you could provide some suggestions on how I can resolve these issues. Thank you in advance!

            Best regards,
            Yingxin Lin




            _______________________________________________
            Bioc-devel at r-project.org mailing list
            https://stat.ethz.ch/mailman/listinfo/bioc-devel

Yingxin Lin

Mon, May 4, 2020 5:16 PM #

Hi Nitesh,

I have created another ssh key. But the same error still comes up. Are there any other way I could fix the problem. Thank you!

Best regards,
Yingxin

?On 5/5/20, 1:20 am, "Nitesh Turaga" <nturaga.bioc at gmail.com> wrote:

Hi,
    
    Everything looks fine. It's very unusual to see that you are getting RW permissions shown from `ssh -T` and you are not able to access your package. 
    
    It could be a firewall / transient issue with your internet. But, just for the sake of it could you try adding another SSH key to your BiocCredentials account and then trying once again. 
    
    Best,
    
    Nitesh

On 5/4/20, 11:17 AM, "Yingxin Lin" <yingxin.lin at sydney.edu.au> wrote:

Dear Nitesh,
    
        Thank you very much for the reply. I have attached my current config file and git remote screenshots. Hope this would help you to target the issues.
    
        Best regards,
        Yingxin

On 5/5/20, 1:11 am, "Nitesh Turaga" <nturaga.bioc at gmail.com> wrote:

You must be using the wrong SSH key most likely. 
    
            If you have R W access it means the key exists but when you try to "fetch" via git, it's using the wrong key. You can set up your config file if you identify which SSH key is correct. 
    
            Your git remote is malformed(formatting), if you resend it to me, I can take a better look at it. 
    
            Best,
    
            Nitesh

On 5/3/20, 10:37 PM, "Bioc-devel on behalf of Yingxin Lin" <bioc-devel-bounces at r-project.org on behalf of yingxin.lin at sydney.edu.au> wrote:

Hi,
    
                I am trying to follow the guideline to sync the existing repositories of my package scClassify, but I got the following error:
    
    
                (base) 192-168-1-112:scClassify yingxinlin$ git fetch --all
                Fetching origin
                From https://protect-au.mimecast.com/s/KzPLCP7LAXf9y0OESzJTPV?domain=github.com
                * branch            master     -> FETCH_HEAD
                Fetching upstream
                FATAL: invalid repo name: 'packages/scClassify.git' -X -C -oForwardX11Timeout=596h -oXauthLocation=/opt/X11/bin/xauth -p 12022 localhost'
                fatal: Could not read from remote repository.
    
                Please make sure you have the correct access rights
                and the repository exists.
                error: Could not fetch upstream
    
                And I have checked ssh -T git at git.bioconductor.org<mailto:git at git.bioconductor.org>, which indicates that I have R and W access for scClassify. The ?~/.ssh/config? file is set as point 15 mentioned in https://protect-au.mimecast.com/s/RzOECQnMBZfgzX8jCP6fFP?domain=bioconductor.org.
    
                Below is my remote setting:
                (base) 192-168-1-112:scClassify yingxinlin$ git remote -v
                origin  https://protect-au.mimecast.com/s/miZqCROND2uo7GJqHPsE2g?domain=github.com (fetch)
                origin  https://protect-au.mimecast.com/s/miZqCROND2uo7GJqHPsE2g?domain=github.com (push)
                upstream        git at git.bioconductor.org<mailto:git at git.bioconductor.org>:packages/scClassify.git (fetch)
                upstream        git at git.bioconductor.org<mailto:git at git.bioconductor.org>:packages/scClassify.git (push)
    
    
                I am wondering if you could provide some suggestions on how I can resolve these issues. Thank you in advance!
    
                Best regards,
                Yingxin Lin
    
    
    
    
                _______________________________________________
                Bioc-devel at r-project.org mailing list
                https://protect-au.mimecast.com/s/oSWnCVARKgCmO27oHJj7UB?domain=stat.ethz.ch

Chengyang.Ji12

Mon, May 4, 2020 6:33 PM #

Try ?git remote set-url upstream git at git.bioconductor.org:packages/scClassify.git?



Sent from Mail<https://go.microsoft.com/fwlink/?LinkId=550986> for Windows 10



From: Yingxin Lin<mailto:yingxin.lin at sydney.edu.au>
Sent: 05 May 2020 08:17
To: Nitesh Turaga<mailto:nturaga.bioc at gmail.com>; bioc-devel at r-project.org<mailto:bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] Could not read from remote repository



Hi Nitesh,

I have created another ssh key. But the same error still comes up. Are there any other way I could fix the problem. Thank you!

Best regards,
Yingxin

?On 5/5/20, 1:20 am, "Nitesh Turaga" <nturaga.bioc at gmail.com> wrote:

Hi,

    Everything looks fine. It's very unusual to see that you are getting RW permissions shown from `ssh -T` and you are not able to access your package.

    It could be a firewall / transient issue with your internet. But, just for the sake of it could you try adding another SSH key to your BiocCredentials account and then trying once again.

    Best,

    Nitesh

On 5/4/20, 11:17 AM, "Yingxin Lin" <yingxin.lin at sydney.edu.au> wrote:

Dear Nitesh,

        Thank you very much for the reply. I have attached my current config file and git remote screenshots. Hope this would help you to target the issues.

        Best regards,
        Yingxin

On 5/5/20, 1:11 am, "Nitesh Turaga" <nturaga.bioc at gmail.com> wrote:

You must be using the wrong SSH key most likely.

            If you have R W access it means the key exists but when you try to "fetch" via git, it's using the wrong key. You can set up your config file if you identify which SSH key is correct.

            Your git remote is malformed(formatting), if you resend it to me, I can take a better look at it.

            Best,

            Nitesh

On 5/3/20, 10:37 PM, "Bioc-devel on behalf of Yingxin Lin" <bioc-devel-bounces at r-project.org on behalf of yingxin.lin at sydney.edu.au> wrote:

Hi,

                I am trying to follow the guideline to sync the existing repositories of my package scClassify, but I got the following error:


                (base) 192-168-1-112:scClassify yingxinlin$ git fetch --all
                Fetching origin
                From https://protect-au.mimecast.com/s/KzPLCP7LAXf9y0OESzJTPV?domain=github.com
                * branch            master     -> FETCH_HEAD
                Fetching upstream
                FATAL: invalid repo name: 'packages/scClassify.git' -X -C -oForwardX11Timeout=596h -oXauthLocation=/opt/X11/bin/xauth -p 12022 localhost'
                fatal: Could not read from remote repository.

                Please make sure you have the correct access rights
                and the repository exists.
                error: Could not fetch upstream

                And I have checked ssh -T git at git.bioconductor.org<mailto:git at git.bioconductor.org>, which indicates that I have R and W access for scClassify. The ?~/.ssh/config? file is set as point 15 mentioned in https://protect-au.mimecast.com/s/RzOECQnMBZfgzX8jCP6fFP?domain=bioconductor.org.

                Below is my remote setting:
                (base) 192-168-1-112:scClassify yingxinlin$ git remote -v
                origin  https://protect-au.mimecast.com/s/miZqCROND2uo7GJqHPsE2g?domain=github.com (fetch)
                origin  https://protect-au.mimecast.com/s/miZqCROND2uo7GJqHPsE2g?domain=github.com (push)
                upstream        git at git.bioconductor.org<mailto:git at git.bioconductor.org>:packages/scClassify.git (fetch)
                upstream        git at git.bioconductor.org<mailto:git at git.bioconductor.org>:packages/scClassify.git (push)


                I am wondering if you could provide some suggestions on how I can resolve these issues. Thank you in advance!

                Best regards,
                Yingxin Lin




                _______________________________________________
                Bioc-devel at r-project.org mailing list
                https://protect-au.mimecast.com/s/oSWnCVARKgCmO27oHJj7UB?domain=stat.ethz.ch




_______________________________________________
Bioc-devel at r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel

Yingxin Lin

Mon, May 4, 2020 6:49 PM #

Hi,

Thank you for your suggestion! However it still doesn?t work (same error).

Best regards,
Yingxin

From: "Chengyang.Ji12" <Chengyang.Ji12 at alumni.xjtlu.edu.cn>
Date: Tuesday, 5 May 2020 at 11:44 am
To: Yingxin Lin <yingxin.lin at sydney.edu.au>, Nitesh Turaga <nturaga.bioc at gmail.com>, "bioc-devel at r-project.org" <bioc-devel at r-project.org>
Subject: RE: [Bioc-devel] Could not read from remote repository


Try ?git remote set-url upstream git at git.bioconductor.org:packages/scClassify.git?



Sent from Mail<https://protect-au.mimecast.com/s/AjEdCZY1NqiA400QFzUlTF?domain=go.microsoft.com> for Windows 10



From: Yingxin Lin<mailto:yingxin.lin at sydney.edu.au>
Sent: 05 May 2020 08:17
To: Nitesh Turaga<mailto:nturaga.bioc at gmail.com>; bioc-devel at r-project.org<mailto:bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] Could not read from remote repository


Hi Nitesh,

I have created another ssh key. But the same error still comes up. Are there any other way I could fix the problem. Thank you!

Best regards,
Yingxin

On 5/5/20, 1:20 am, "Nitesh Turaga" <nturaga.bioc at gmail.com> wrote:

Hi,

    Everything looks fine. It's very unusual to see that you are getting RW permissions shown from `ssh -T` and you are not able to access your package.

    It could be a firewall / transient issue with your internet. But, just for the sake of it could you try adding another SSH key to your BiocCredentials account and then trying once again.

    Best,

    Nitesh

On 5/4/20, 11:17 AM, "Yingxin Lin" <yingxin.lin at sydney.edu.au> wrote:

Dear Nitesh,

        Thank you very much for the reply. I have attached my current config file and git remote screenshots. Hope this would help you to target the issues.

        Best regards,
        Yingxin

On 5/5/20, 1:11 am, "Nitesh Turaga" <nturaga.bioc at gmail.com> wrote:

You must be using the wrong SSH key most likely.

            If you have R W access it means the key exists but when you try to "fetch" via git, it's using the wrong key. You can set up your config file if you identify which SSH key is correct.

            Your git remote is malformed(formatting), if you resend it to me, I can take a better look at it.

            Best,

            Nitesh

On 5/3/20, 10:37 PM, "Bioc-devel on behalf of Yingxin Lin" <bioc-devel-bounces at r-project.org on behalf of yingxin.lin at sydney.edu.au> wrote:

Hi,

                I am trying to follow the guideline to sync the existing repositories of my package scClassify, but I got the following error:


                (base) 192-168-1-112:scClassify yingxinlin$ git fetch --all
                Fetching origin
                From https://protect-au.mimecast.com/s/KzPLCP7LAXf9y0OESzJTPV?domain=github.com<https://protect-au.mimecast.com/s/lsPJC1WLPxcxzllquGGhDi?domain=github.com>
                * branch            master     -> FETCH_HEAD
                Fetching upstream
                FATAL: invalid repo name: 'packages/scClassify.git' -X -C -oForwardX11Timeout=596h -oXauthLocation=/opt/X11/bin/xauth -p 12022 localhost'
                fatal: Could not read from remote repository.

                Please make sure you have the correct access rights
                and the repository exists.
                error: Could not fetch upstream

                And I have checked ssh -T git at git.bioconductor.org<mailto:git at git.bioconductor.org>, which indicates that I have R and W access for scClassify. The ?~/.ssh/config? file is set as point 15 mentioned in https://protect-au.mimecast.com/s/RzOECQnMBZfgzX8jCP6fFP?domain=bioconductor.org<https://protect-au.mimecast.com/s/-Zg5C2xMQziWlgg8uBZDZA?domain=bioconductor.org>.

                Below is my remote setting:
                (base) 192-168-1-112:scClassify yingxinlin$ git remote -v
                origin  https://protect-au.mimecast.com/s/miZqCROND2uo7GJqHPsE2g?domain=github.com<https://protect-au.mimecast.com/s/3gAYC3QNPBioAOO2IDKHop?domain=github.com> (fetch)
                origin  https://protect-au.mimecast.com/s/miZqCROND2uo7GJqHPsE2g?domain=github.com<https://protect-au.mimecast.com/s/3gAYC3QNPBioAOO2IDKHop?domain=github.com> (push)
                upstream        git at git.bioconductor.org<mailto:git at git.bioconductor.org>:packages/scClassify.git (fetch)
                upstream        git at git.bioconductor.org<mailto:git at git.bioconductor.org>:packages/scClassify.git (push)


                I am wondering if you could provide some suggestions on how I can resolve these issues. Thank you in advance!

                Best regards,
                Yingxin Lin




                _______________________________________________
                Bioc-devel at r-project.org mailing list
                https://protect-au.mimecast.com/s/oSWnCVARKgCmO27oHJj7UB?domain=stat.ethz.ch<https://protect-au.mimecast.com/s/m078C4QOPEiE0qqlIVNB9x?domain=stat.ethz.ch>




_______________________________________________
Bioc-devel at r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel<https://protect-au.mimecast.com/s/m078C4QOPEiE0qqlIVNB9x?domain=stat.ethz.ch>

Nitesh Turaga

Tue, May 5, 2020 6:47 AM #

I'm wondering if you are trying to connect from a IP address which is blocked by our server or your institutional/home firewall.

Do you mind telling me where you are trying to access this from?

Nitesh

On May 4, 2020, at 9:49 PM, Yingxin Lin <yingxin.lin at sydney.edu.au> wrote:

Hi, 
 
Thank you for your suggestion! However it still doesn?t work (same error).
 
Best regards,
Yingxin
 
From: "Chengyang.Ji12" <Chengyang.Ji12 at alumni.xjtlu.edu.cn>
Date: Tuesday, 5 May 2020 at 11:44 am
To: Yingxin Lin <yingxin.lin at sydney.edu.au>, Nitesh Turaga <nturaga.bioc at gmail.com>, "bioc-devel at r-project.org" <bioc-devel at r-project.org>
Subject: RE: [Bioc-devel] Could not read from remote repository
 
Try ?git remote set-url upstream git at git.bioconductor.org:packages/scClassify.git?
 
Sent from Mail for Windows 10
 
From: Yingxin Lin
Sent: 05 May 2020 08:17
To: Nitesh Turaga; bioc-devel at r-project.org
Subject: Re: [Bioc-devel] Could not read from remote repository
 
Hi Nitesh,

I have created another ssh key. But the same error still comes up. Are there any other way I could fix the problem. Thank you!

Best regards,
Yingxin

On 5/5/20, 1:20 am, "Nitesh Turaga" <nturaga.bioc at gmail.com> wrote:

    Hi,
    
    Everything looks fine. It's very unusual to see that you are getting RW permissions shown from `ssh -T` and you are not able to access your package. 
    
    It could be a firewall / transient issue with your internet. But, just for the sake of it could you try adding another SSH key to your BiocCredentials account and then trying once again. 
    
    Best,
    
    Nitesh 
    
    On 5/4/20, 11:17 AM, "Yingxin Lin" <yingxin.lin at sydney.edu.au> wrote:
    
         Dear Nitesh,
    
        Thank you very much for the reply. I have attached my current config file and git remote screenshots. Hope this would help you to target the issues.
    
        Best regards,
        Yingxin
    
    
        On 5/5/20, 1:11 am, "Nitesh Turaga" <nturaga.bioc at gmail.com> wrote:
    
            You must be using the wrong SSH key most likely. 
    
            If you have R W access it means the key exists but when you try to "fetch" via git, it's using the wrong key. You can set up your config file if you identify which SSH key is correct. 
    
            Your git remote is malformed(formatting), if you resend it to me, I can take a better look at it. 
    
            Best,
    
            Nitesh
    
            On 5/3/20, 10:37 PM, "Bioc-devel on behalf of Yingxin Lin" <bioc-devel-bounces at r-project.org on behalf of yingxin.lin at sydney.edu.au> wrote:
    
                Hi,
    
                I am trying to follow the guideline to sync the existing repositories of my package scClassify, but I got the following error:
    
    
                (base) 192-168-1-112:scClassify yingxinlin$ git fetch --all
                Fetching origin
                From https://protect-au.mimecast.com/s/KzPLCP7LAXf9y0OESzJTPV?domain=github.com
                * branch            master     -> FETCH_HEAD
                Fetching upstream
                FATAL: invalid repo name: 'packages/scClassify.git' -X -C -oForwardX11Timeout=596h -oXauthLocation=/opt/X11/bin/xauth -p 12022 localhost'
                fatal: Could not read from remote repository.
    
                Please make sure you have the correct access rights
                and the repository exists.
                error: Could not fetch upstream
    
                And I have checked ssh -T git at git.bioconductor.org<mailto:git at git.bioconductor.org>, which indicates that I have R and W access for scClassify. The ?~/.ssh/config? file is set as point 15 mentioned in https://protect-au.mimecast.com/s/RzOECQnMBZfgzX8jCP6fFP?domain=bioconductor.org.
    
                Below is my remote setting:
                (base) 192-168-1-112:scClassify yingxinlin$ git remote -v
                origin  https://protect-au.mimecast.com/s/miZqCROND2uo7GJqHPsE2g?domain=github.com (fetch)
                origin  https://protect-au.mimecast.com/s/miZqCROND2uo7GJqHPsE2g?domain=github.com (push)
                upstream        git at git.bioconductor.org<mailto:git at git.bioconductor.org>:packages/scClassify.git (fetch)
                upstream        git at git.bioconductor.org<mailto:git at git.bioconductor.org>:packages/scClassify.git (push)
    
    
                I am wondering if you could provide some suggestions on how I can resolve these issues. Thank you in advance!
    
                Best regards,
                Yingxin Lin
    
    
    
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Yingxin Lin

Tue, May 5, 2020 6:51 AM #

Hi Nitesh,

I am accessing this from my home in Sydney Australia. I could probably try to remote access my university computer tomorrow (the University of Sydney).

Best wishes,
Yingxin

?On 5/5/20, 11:47 pm, "Nitesh Turaga" <nturaga.bioc at gmail.com> wrote:

I'm wondering if you are trying to connect from a IP address which is blocked by our server or your institutional/home firewall.

    Do you mind telling me where you are trying to access this from?

    Nitesh

> On May 4, 2020, at 9:49 PM, Yingxin Lin <yingxin.lin at sydney.edu.au> wrote:

> 
    > Hi, 
    >  
    > Thank you for your suggestion! However it still doesn?t work (same error).
    >  
    > Best regards,
    > Yingxin
    >  
    > From: "Chengyang.Ji12" <Chengyang.Ji12 at alumni.xjtlu.edu.cn>
    > Date: Tuesday, 5 May 2020 at 11:44 am
    > To: Yingxin Lin <yingxin.lin at sydney.edu.au>, Nitesh Turaga <nturaga.bioc at gmail.com>, "bioc-devel at r-project.org" <bioc-devel at r-project.org>
    > Subject: RE: [Bioc-devel] Could not read from remote repository
    >  
    > Try ?git remote set-url upstream git at git.bioconductor.org:packages/scClassify.git?
    >  
    > Sent from Mail for Windows 10
    >  
    > From: Yingxin Lin
    > Sent: 05 May 2020 08:17
    > To: Nitesh Turaga; bioc-devel at r-project.org
    > Subject: Re: [Bioc-devel] Could not read from remote repository
    >  
    > Hi Nitesh,
    > 
    > I have created another ssh key. But the same error still comes up. Are there any other way I could fix the problem. Thank you!
    > 
    > Best regards,
    > Yingxin
    >

> On 5/5/20, 1:20 am, "Nitesh Turaga" <nturaga.bioc at gmail.com> wrote:

> 
    >     Hi,
    >     
    >     Everything looks fine. It's very unusual to see that you are getting RW permissions shown from `ssh -T` and you are not able to access your package. 
    >     
    >     It could be a firewall / transient issue with your internet. But, just for the sake of it could you try adding another SSH key to your BiocCredentials account and then trying once again. 
    >     
    >     Best,
    >     
    >     Nitesh 
    >

> On 5/4/20, 11:17 AM, "Yingxin Lin" <yingxin.lin at sydney.edu.au> wrote:

>     
    >          Dear Nitesh,
    >     
    >         Thank you very much for the reply. I have attached my current config file and git remote screenshots. Hope this would help you to target the issues.
    >     
    >         Best regards,
    >         Yingxin
    >     
    >

> On 5/5/20, 1:11 am, "Nitesh Turaga" <nturaga.bioc at gmail.com> wrote:

>     
    >             You must be using the wrong SSH key most likely. 
    >     
    >             If you have R W access it means the key exists but when you try to "fetch" via git, it's using the wrong key. You can set up your config file if you identify which SSH key is correct. 
    >     
    >             Your git remote is malformed(formatting), if you resend it to me, I can take a better look at it. 
    >     
    >             Best,
    >     
    >             Nitesh
    >     
    >             On 5/3/20, 10:37 PM, "Bioc-devel on behalf of Yingxin Lin" <bioc-devel-bounces at r-project.org on behalf of yingxin.lin at sydney.edu.au> wrote:
    >     
    >                 Hi,
    >     
    >                 I am trying to follow the guideline to sync the existing repositories of my package scClassify, but I got the following error:
    >     
    >     
    >                 (base) 192-168-1-112:scClassify yingxinlin$ git fetch --all
    >                 Fetching origin
    >                 From https://protect-au.mimecast.com/s/KFlOCROND2uoxgLjh94fIZ?domain=github.com
    >                 * branch            master     -> FETCH_HEAD
    >                 Fetching upstream
    >                 FATAL: invalid repo name: 'packages/scClassify.git' -X -C -oForwardX11Timeout=596h -oXauthLocation=/opt/X11/bin/xauth -p 12022 localhost'
    >                 fatal: Could not read from remote repository.
    >     
    >                 Please make sure you have the correct access rights
    >                 and the repository exists.
    >                 error: Could not fetch upstream
    >     
    >                 And I have checked ssh -T git at git.bioconductor.org<mailto:git at git.bioconductor.org>, which indicates that I have R and W access for scClassify. The ?~/.ssh/config? file is set as point 15 mentioned in https://protect-au.mimecast.com/s/2uytCVARKgCmYPANczi9Vw?domain=bioconductor.org.
    >     
    >                 Below is my remote setting:
    >                 (base) 192-168-1-112:scClassify yingxinlin$ git remote -v
    >                 origin  https://protect-au.mimecast.com/s/cl6pCWLVXkUZVyBRhKT2GS?domain=github.com (fetch)
    >                 origin  https://protect-au.mimecast.com/s/cl6pCWLVXkUZVyBRhKT2GS?domain=github.com (push)
    >                 upstream        git at git.bioconductor.org<mailto:git at git.bioconductor.org>:packages/scClassify.git (fetch)
    >                 upstream        git at git.bioconductor.org<mailto:git at git.bioconductor.org>:packages/scClassify.git (push)
    >     
    >     
    >                 I am wondering if you could provide some suggestions on how I can resolve these issues. Thank you in advance!
    >     
    >                 Best regards,
    >                 Yingxin Lin
    >     
    >     
    >     
    >                  [[alternative HTML version deleted]]
    >     
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    >     
    >     
    >     
    > 
    > _______________________________________________
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