Hello, I've recently discovered letterFrequencyInSlidingView in the Biostrings package. It does what I want, but on single letters. Are there plans to implement a k-mer version of this ? Something like a hybrid with nucleotideFrequency ? -------------------------------------- Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia
[Bioc-devel] Biostrings kmer Positional Frequencies
2 messages · Dario Strbenac, Valerie Obenchain
Hi Dario, I've put this request in our issue tracker and will discuss with Herve when he is back in the office. Valerie
On 09/12/12 23:00, Dario Strbenac wrote:
Hello, I've recently discovered letterFrequencyInSlidingView in the Biostrings package. It does what I want, but on single letters. Are there plans to implement a k-mer version of this ? Something like a hybrid with nucleotideFrequency ? -------------------------------------- Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia
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