The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. Please see the current list at https://support.bioconductor.org/p/9152979/ It should be noted, we did try to reach out to these package maintainers multiple times and they were either unresponsive or had emails bounce. We encourage anyone that is familiar with a package maintainer on this list to reach out to them and notify them directly. Packages can be un-deprecated if a maintainer fixes the package to build/check cleanly before the next release and requests un-deprecation on the bioc-devel at r-project.org mailing list Please do not undeprecate a package yourself. You must request undeprecation from the Bioconductor core team at bioc-devel at r-project.org. Thank you Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
[Bioc-devel] Deprecated Packages for Bioc 3.18
3 messages · Jean-Philippe Fortin, Shepherd, Lori
8 days later
Hi Lori, shinyMethyl is now building -- could you undeprecate the package please? Thank you, JP On Tue, Sep 5, 2023 at 10:50?AM Kern, Lori via Bioc-devel <
bioc-devel at r-project.org> wrote:
The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. Please see the current list at https://support.bioconductor.org/p/9152979/ It should be noted, we did try to reach out to these package maintainers multiple times and they were either unresponsive or had emails bounce. We encourage anyone that is familiar with a package maintainer on this list to reach out to them and notify them directly. Packages can be un-deprecated if a maintainer fixes the package to build/check cleanly before the next release and requests un-deprecation on the bioc-devel at r-project.org mailing list Please do not undeprecate a package yourself. You must request undeprecation from the Bioconductor core team at bioc-devel at r-project.org. Thank you Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Yes I will undeprecate now that the build report is clear. Thank you . Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Jean-Philippe Fortin <fortin946 at gmail.com>
Sent: Thursday, September 14, 2023 11:15 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] Deprecated Packages for Bioc 3.18
Sent: Thursday, September 14, 2023 11:15 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] Deprecated Packages for Bioc 3.18
Hi Lori, shinyMethyl is now building -- could you undeprecate the package please? Thank you, JP On Tue, Sep 5, 2023 at 10:50?AM Kern, Lori via Bioc-devel < bioc-devel at r-project.org> wrote: > The Bioconductor Team is continuing to identify packages that will be > deprecated in the next release to allow for the Bioconductor community to > respond accordingly. > > Please see the current list at > https://secure-web.cisco.com/1_b7-3BJUqbWpcljNgxwTqQej1fRAwTnfvD1X3nXP1BIUEMu8i3w7cAUCiqYSojwILSsfD4zGb7YFx1E-Tm3Ufa3_SHwMOTw53moeDJUQ0vK9NzQxSBT2J7MIoP3flsOYDBOJAxo_Rw4bECt5KdLQHDV1Xe42bvlqlbaCmNnhOEbqYR5REy8LEiIilAh0M2BL_9nE-146XLT4Vmg9UI_lbkV2KzxohQ_q5AloWwjBXQcOrlt82Ggo9eNB5ZYxB9a2YtTnZ1Y7L2om0YbLixPCJDZHrhRYbdVic_j3JXk5ix1wuQ4iH1uC-eUHWcBelpPm/https%3A%2F%2Fsupport.bioconductor.org%2Fp%2F9152979%2F > > > > It should be noted, we did try to reach out to these package maintainers > multiple times and they were either unresponsive or had emails bounce. We > encourage anyone that is familiar with a package maintainer on this list to > reach out to them and notify them directly. Packages can be un-deprecated > if a maintainer fixes the package to build/check cleanly before the next > release and requests un-deprecation on the bioc-devel at r-project.org > mailing list > > > > Please do not undeprecate a package yourself. You must request > undeprecation from the Bioconductor core team at bioc-devel at r-project.org. > > > Thank you > > > Lori Shepherd - Kern > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel at r-project.org mailing list > https://secure-web.cisco.com/1JxCy1ckLbiHPIBrtH-cgfpkEATjl0zYIQt1Rd5ujr-t0PRontcLagPg8_tsdto4W5VwOlt0jQs4z2GmUQYFyxWDI7YEJKQ7hWROOrxIiayggxoNynbH0IwyqlOgoz2NREKrFiXNtJ0KF5w15IUgpF7WYcUW4606Rqa-BNTDgCDMG2JH2EY2ouPDeDW4NPZG5C8krNNGCS-lt8mUXSs9vG2YCAqVyR-DFQKUd079_x9Z_CLFgNtIQnN1mNAA3oWwcKeI4SD1xCk3ed1XhgXCb9ESmkRAYVvHERboJdNbWWE434AYn2bj0vq4ut2UN30Pv/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://secure-web.cisco.com/1JxCy1ckLbiHPIBrtH-cgfpkEATjl0zYIQt1Rd5ujr-t0PRontcLagPg8_tsdto4W5VwOlt0jQs4z2GmUQYFyxWDI7YEJKQ7hWROOrxIiayggxoNynbH0IwyqlOgoz2NREKrFiXNtJ0KF5w15IUgpF7WYcUW4606Rqa-BNTDgCDMG2JH2EY2ouPDeDW4NPZG5C8krNNGCS-lt8mUXSs9vG2YCAqVyR-DFQKUd079_x9Z_CLFgNtIQnN1mNAA3oWwcKeI4SD1xCk3ed1XhgXCb9ESmkRAYVvHERboJdNbWWE434AYn2bj0vq4ut2UN30Pv/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.