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[Bioc-devel] Access issues to package fcoex

4 messages · Turaga, Nitesh, Tiago Lubiana Alves

Original
Tiago Lubiana Alves
# 
Hello all,

I have recently made a few change to a package that I mantain, but I seem
to be currently unable to update the fcoex package.

Even though I am the maintainer (
http://bioconductor.org/packages/3.11/bioc/html/fcoex.html)  I do not have
access to it according to BiocCredentials:
'tiago.lubiana.alves at usp.br' has access to the following packages:FCBF
PubScore

(and only those two) .

I believe that might be the reason why I am getting the error message when
I run git push upstream master:

FATAL: W any packages/fcoex lubianat DENIED by fallthru
Do you know why this might be occurring?

Thank you for your time,
Tiago

Tiago Lubiana,
MSc in Bioinformatics, University of S?o Paulo
*Computational Systems Biology Laboratory (CSBL)*
Turaga, Nitesh
# 
We need more information,

http://bioconductor.org/developers/how-to/git/faq/ 

#13 and #14 in the FAQ are relevant to you.

Nitesh
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5 days later
Tiago Lubiana Alves
# 
Thanks Nitesh,

Adding more information about the issue:


*1 - My remotes seem to be set up correctly. *
*$ git remote -v *


origin  git at github.com:csbl-usp/fcoex.git (fetch)

origin  git at github.com:csbl-usp/fcoex.git (push)

upstream        git at git.bioconductor.org:packages/fcoex.git (fetch)

upstream        git at git.bioconductor.org:packages/fcoex.git (push)



*2 - Push to origin works, push to remote does not. *
*$ git push origin master  *

Everything up-to-date


*$ git push upstream master              *

FATAL: W any packages/fcoex lubianat DENIED by fallthru

(or you mis-spelled the reponame)

fatal: Could not read from remote repository.



Please make sure you have the correct access rights

and the repository exists.


*3 - I only have read access to the fcoex package. *

*$ ssh -T git at git.bioconductor.org <git at git.bioconductor.org>*
 R   packages/fcoex

*4 - The same command shows write access to the other packages I maintain.*

*$ ssh -T git at git.bioconductor.org <git at git.bioconductor.org>* R W
packages/FCBF
 (...)
 R W packages/PubScore

*5 - I am the maintainer of all 3 packages above. *

For fcoex and PubScore, the original repo was sent from the csbl-usp
<https://github.com/csbl-usp> (my laboratory) account:
- fcoex submission issue
<https://github.com/Bioconductor/Contributions/issues/1241>
- PubScore submission issue
<https://github.com/Bioconductor/Contributions/issues/1312>

For FCBF, the original repo was from the lubianat
<https://github.com/lubianat> (my personal) account:
- FCBF submission issue
<https://github.com/Bioconductor/Contributions/issues/892>

But I am nevertheless listed as the maintainer for all 3, with the same
e-mail:
- fcoex <http://bioconductor.org/packages/3.11/bioc/html/fcoex.html> :
 Maintainer:
Tiago Lubiana <tiago.lubiana.alves at usp.br>
- FCBF <https://bioconductor.org/packages/3.11/bioc/html/FCBF.html>:
Maintainer:
Tiago Lubiana <tiago.lubiana.alves at usp.br> (which I have recently
updated)
- PubScore <https://bioconductor.org/packages/3.11/bioc/html/PubScore.html>
:  Maintainer: Tiago Lubiana <tiago.lubiana.alves at usp.br>

*6 - I have an ssh config file with the content: *

host git.bioconductor.org
    HostName git.bioconductor.org
    IdentityFile ~/.ssh/id_rsa.pub
    User git

*9- The public ssh-key was copied and added to BiocCredentials, and should
be functional.*

*xclip -sel clip < ~/.ssh/id_rsa.pub *
When adding it to https://git.bioconductor.org/BiocCredentials/add_sshkey/ I
get the error Ssh key with this Sshkey already exists. This is expected, as
I had added it before.


If there is anything else that would be important to check, please let me
know and I will add.

I am not super savvy with git too, and I already apologize for any basic
mistakes.
I am sorry for the trouble and thank you very much for your time and help.

Tiago

Tiago Lubiana,
MSc in Bioinformatics, University of S?o Paulo
*Computational Systems Biology Laboratory (CSBL)*




On Thu, Apr 9, 2020 at 2:01 PM Turaga, Nitesh <Nitesh.Turaga at roswellpark.org>
wrote:

  
  


  


      

    

    

      
      

        


  

        

      Turaga, Nitesh
    

    

      
      #
    

  


  

      
Thanks for the information. This helped me resolve your issue quickly.

Please try again now.

Best,

Nitesh

            

      
      
      
    

        

      
      
    

            

      
      
      
    

        
This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.