Dear Bioconductor Core Team, The bumphunter package is exhibiting errors under the Linux and Windows platforms due to a file download failure from the GENCODE FTP server at the time of the daily multi-platform build/check testing for BioC 3.14. *https://bioc.ism.ac.jp/packages/checkResults/devel/bioc-LATEST/bumphunter/ <https://bioc.ism.ac.jp/packages/checkResults/devel/bioc-LATEST/bumphunter/>* *FTP Server File Download Error:* Error in `download.file(resource(con), destfile)`: cannot open URL ' ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_25/gencode.v25.annotation.gtf.gz ' The file is downloading fine on our end. We routinely see this error in the daily testing reports and it goes away in a day or two. But it seems to be persistent for the past five days or so. Are such errors accepted or do we need to take any action from our end? Thank you very much in advance for any input. Thanks, Selvi
[Bioc-devel] bumphunter 1.35.0 - GENCODE FTP Server File Download Error
3 messages · Tamilselvi Guharaj, Nitesh Turaga
2 days later
Dear Selvi, It looks like a transient issue that happens on and off. I?m not sure there is any special insight I can offer here. I do not think any action is needed on your end. Best, Nitesh Nitesh Turaga Scientist II, Department of Data Science, Bioconductor Core Team Member Dana Farber Cancer Institute
On Oct 25, 2021, at 12:00 PM, Tamilselvi Guharaj <selvi at ds.dfci.harvard.edu> wrote: Dear Bioconductor Core Team, The bumphunter package is exhibiting errors under the Linux and Windows platforms due to a file download failure from the GENCODE FTP server at the time of the daily multi-platform build/check testing for BioC 3.14. *https://bioc.ism.ac.jp/packages/checkResults/devel/bioc-LATEST/bumphunter/ <https://bioc.ism.ac.jp/packages/checkResults/devel/bioc-LATEST/bumphunter/>* *FTP Server File Download Error:* Error in `download.file(resource(con), destfile)`: cannot open URL ' ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_25/gencode.v25.annotation.gtf.gz ' The file is downloading fine on our end. We routinely see this error in the daily testing reports and it goes away in a day or two. But it seems to be persistent for the past five days or so. Are such errors accepted or do we need to take any action from our end? Thank you very much in advance for any input. Thanks, Selvi [[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Thanks Nitesh. Selvi On Wed, Oct 27, 2021 at 3:51 PM Nitesh Turaga <nturaga.bioc at gmail.com> wrote:
Dear Selvi, It looks like a transient issue that happens on and off. I?m not sure there is any special insight I can offer here. I do not think any action is needed on your end. Best, Nitesh Nitesh Turaga Scientist II, Department of Data Science, Bioconductor Core Team Member Dana Farber Cancer Institute
On Oct 25, 2021, at 12:00 PM, Tamilselvi Guharaj <
selvi at ds.dfci.harvard.edu> wrote:
Dear Bioconductor Core Team, The bumphunter package is exhibiting errors under the Linux and Windows platforms due to a file download failure from the GENCODE FTP server at
the
time of the daily multi-platform build/check testing for BioC 3.14. *
<
* *FTP Server File Download Error:* Error in `download.file(resource(con), destfile)`: cannot open URL '
ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_25/gencode.v25.annotation.gtf.gz
' The file is downloading fine on our end. We routinely see this error in
the
daily testing reports and it goes away in a day or two. But it seems to
be
persistent for the past five days or so.
Are such errors accepted or do we need to take any action from our end?
Thank you very much in advance for any input.
Thanks,
Selvi
[[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel