Hello, A few days ago I submitted my GitHub id andreamrau (since GitHub knows my SSH key) and my SVN id (a.rau) using the Git/SVN transition form, and I still seem to be having difficulty accessing my packages coseq and HTSFilter. I see the following message when I try to git clone one of my packages: Permission denied (publickey). fatal: Could not read from remote repository Could you let me know if there's something I have done incorrectly with the transition form? Thanks very much for the help, Andrea
[Bioc-devel] Git permission denied (publickey)
6 messages · Andrea Rau, Turaga, Nitesh, Sebastian Gibb +1 more
Your key is in the system. Please send a list of commands you are trying along with the result. Also send the output for `git remove -v` Best, Nitesh
On Oct 9, 2017, at 4:22 PM, Andrea Rau <andrea.rau at inra.fr> wrote: Hello, A few days ago I submitted my GitHub id andreamrau (since GitHub knows my SSH key) and my SVN id (a.rau) using the Git/SVN transition form, and I still seem to be having difficulty accessing my packages coseq and HTSFilter. I see the following message when I try to git clone one of my packages: Permission denied (publickey). fatal: Could not read from remote repository Could you let me know if there?s something I have done incorrectly with the transition form? Thanks very much for the help, Andrea
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Dear Biocondcutor admins, I am the maintainer of the cleaver package (and a co-maintainer of MSnbase, Pbase, synapter). As many other user mentioned here I got the same "permission denied (publickey)" error message. I already submit my mail address, svn username and github id via the google form. My mail address: mail at sebastiangibb.de Svn username: s.gibb GitHub ID: sgibb (public key is available via https://github.com/sgibb.keys ) I tried: git clone git at git.bioconductor.org:packages/cleaver Cloning into 'cleaver'... Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. My .ssh/config (same as for github but hostname differs): Host bioconductor.org Hostname bioconductor.org User git IdentityFile /home/sebastian/.ssh/sgibb at github:id_rsa PreferredAuthentications publickey Anything else I could do? Best wishes, Sebastian
On 2017-10-09 22:22:19, andrea.rau at inra.fr wrote:
Hello,
A few days ago I submitted my GitHub id andreamrau (since GitHub knows my SSH key) and my SVN id (a.rau) using the Git/SVN transition form, and I still seem to be having difficulty accessing my packages coseq and HTSFilter. I see the following message when I try to git clone one of my packages:
Permission denied (publickey).
fatal: Could not read from remote repository
Could you let me know if there's something I have done incorrectly with the transition form?
Thanks very much for the help,
Andrea
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On 10/10/2017 04:43 PM, Sebastian Gibb wrote:
Dear Biocondcutor admins, I am the maintainer of the cleaver package (and a co-maintainer of MSnbase, Pbase, synapter). As many other user mentioned here I got the same "permission denied (publickey)" error message. I already submit my mail address, svn username and github id via the google form. My mail address: mail at sebastiangibb.de Svn username: s.gibb GitHub ID: sgibb (public key is available via https://github.com/sgibb.keys ) I tried: git clone git at git.bioconductor.org:packages/cleaver Cloning into 'cleaver'... Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. My .ssh/config (same as for github but hostname differs): Host bioconductor.org Hostname bioconductor.org
I believe that should be git.bioconductor.org You can also see the ssh transaction and (when successful) permissions with ssh -v git at git.bioconductor.org/packages/cleaver Martin
User git IdentityFile /home/sebastian/.ssh/sgibb at github:id_rsa PreferredAuthentications publickey Anything else I could do? Best wishes, Sebastian On 2017-10-09 22:22:19, andrea.rau at inra.fr wrote:
Hello,
A few days ago I submitted my GitHub id andreamrau (since GitHub knows my SSH key) and my SVN id (a.rau) using the Git/SVN transition form, and I still seem to be having difficulty accessing my packages coseq and HTSFilter. I see the following message when I try to git clone one of my packages:
Permission denied (publickey).
fatal: Could not read from remote repository
Could you let me know if there's something I have done incorrectly with the transition form?
Thanks very much for the help,
Andrea
[[alternative HTML version deleted]]
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On 2017-10-10 22:48:43, martin.morgan at roswellpark.org wrote:
On 10/10/2017 04:43 PM, Sebastian Gibb wrote:
Dear Biocondcutor admins, I am the maintainer of the cleaver package (and a co-maintainer of MSnbase, Pbase, synapter). As many other user mentioned here I got the same "permission denied (publickey)" error message. I already submit my mail address, svn username and github id via the google form. My mail address: mail at sebastiangibb.de Svn username: s.gibb GitHub ID: sgibb (public key is available via https://github.com/sgibb.keys ) I tried: git clone git at git.bioconductor.org:packages/cleaver Cloning into 'cleaver'... Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. My .ssh/config (same as for github but hostname differs): Host bioconductor.org Hostname bioconductor.org
I believe that should be git.bioconductor.org
Great, thanks! Sorry, such an obvious error! Best wishes, Sebastian
You can also see the ssh transaction and (when successful) permissions with ssh -v git at git.bioconductor.org/packages/cleaver Martin
User git IdentityFile /home/sebastian/.ssh/sgibb at github:id_rsa PreferredAuthentications publickey Anything else I could do? Best wishes, Sebastian On 2017-10-09 22:22:19, andrea.rau at inra.fr wrote:
Hello,
A few days ago I submitted my GitHub id andreamrau (since GitHub knows my SSH key) and my SVN id (a.rau) using the Git/SVN transition form, and I still seem to be having difficulty accessing my packages coseq and HTSFilter. I see the following message when I try to git clone one of my packages:
Permission denied (publickey).
fatal: Could not read from remote repository
Could you let me know if there's something I have done incorrectly with the transition form?
Thanks very much for the help,
Andrea
[[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
9 days later
Hi Nitesh, Thanks for the quick reply -- after reading through the exchanges on the list over the past week, I realized that my problem was related to the fact that my SSH keys were named github_rsa and github_rsa.pub (rather than id_rsa and id_rsa.pub). I added a config file (as suggested by the FAQ #15 at http://master.bioconductor.org/developers/how-to/git/faq/) in ~/.ssh/ with the following text: host git.bioconductor.org HostName git.bioconductor.org IdentityFile ~/.ssh/github_rsa User git And now everything seems to be working just fine. Thanks again, Andrea -----Message d'origine----- De?: Turaga, Nitesh [mailto:Nitesh.Turaga at RoswellPark.org] Envoy??: lundi 9 octobre 2017 23:12 ??: Andrea Rau <andrea.rau at inra.fr> Cc?: bioc-devel at r-project.org Objet?: Re: Git permission denied (publickey) Your key is in the system. Please send a list of commands you are trying along with the result. Also send the output for `git remove -v` Best, Nitesh
On Oct 9, 2017, at 4:22 PM, Andrea Rau <andrea.rau at inra.fr> wrote: Hello, A few days ago I submitted my GitHub id andreamrau (since GitHub knows my SSH key) and my SVN id (a.rau) using the Git/SVN transition form, and I still seem to be having difficulty accessing my packages coseq and HTSFilter. I see the following message when I try to git clone one of my packages: Permission denied (publickey). fatal: Could not read from remote repository Could you let me know if there?s something I have done incorrectly with the transition form? Thanks very much for the help, Andrea
This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.