Hi Herve, Thanks for clarifying on the matter. I followed your instructions and did *git cherry-pick* to make the following changes - fix a bug in one of the functions - add a citation - fix the readme I bumped the version number from 1.4.0 to 1.4.1 and tried to push to the release branch, but I when I run the command, git push upstream RELEASE_3_6 I meet with the following error *fatal: remote error: FATAL: W any packages/CountClust nobody DENIED by fallthru* *(or you mis-spelled the reponame)* You can check the branch I want to push on my Github *https://github.com/kkdey/CountClust/tree/RELEASE_3_6 <https://github.com/kkdey/CountClust/tree/RELEASE_3_6>* This is my output from *git remote -v * *origin https://github.com/kkdey/CountClust.git <https://github.com/kkdey/CountClust.git> (fetch)* *origin https://github.com/kkdey/CountClust.git <https://github.com/kkdey/CountClust.git> (push)* *upstream https://git.bioconductor.org/packages/CountClust <https://git.bioconductor.org/packages/CountClust> (fetch)* *upstream https://git.bioconductor.org/packages/CountClust <https://git.bioconductor.org/packages/CountClust> (push)* Can you please let me know what I am doing wrong here and how I can update the release version? Thank you so much! Kushal
On 30 October 2017 at 17:50, Herv? Pag?s <hpages at fredhutch.org> wrote:
Hi Kushal, If you push changes without bumping the version of your package, the update won't propagate. You only bumped the version to 1.5.1 today so you need to wait about 24 hours before seeing this reflected on the landing page for CountClust. Also please note that you did the version bump plus a few other commits (6 commits in total) in master today **after** we created the RELEASE_3_6 branch so these changes will only propagate to BioC 3.7 (the new devel version of BioC, starting tomorrow). If you want these changes to also propagate to the BioC 3.6 release you'll need to push them to the RELEASE_3_6 branch. This is typically done with 'git cherry-pick' as documented here: https://bioconductor.org/developers/how-to/git/bug-fix-in- release-and-devel/ Cheers, H. On 10/30/2017 02:41 PM, kushal kumar dey wrote:
Hi all, I am the author and maintainer of the CountClust package. I recently submitted an update (version 1.5.1) to the package through Bioconductor Git and I can access this updated version when I clone the source repository git clone https://urldefense.proofpoint.com/v2/url?u=https-3A__git.bio conductor.org_packages_CountClust&d=DwICAg&c=eRAMFD45gAfqt84 VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=-x3S 8Sl0fsASITg_-ULMYIykoPk6Y0PqK2NoRjC43iA&s=YBM0DldFbCkrEBnHaB n5X8-jb1yhm_GmSUWL6SIGLmo&e= However, the updated version is not available in the official Bioconductor 3.6 page, which still shows the version 1.3.0. https://urldefense.proofpoint.com/v2/url?u=https-3A__www.bio conductor.org_packages_3.6_bioc_html_CountClust.html&d=DwICA g&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvS XAJJKaaPhzWA&m=-x3S8Sl0fsASITg_-ULMYIykoPk6Y0PqK2NoRjC43iA& s=UfPX4T5l4JBfXBumCcQ-5YOm59i_xfX2OEILrQ3I2u0&e= Can you please let me know if the page has not been updated for the packages yet or if I would need to do something at my end to update the version reported on the page? Thanks so much
-- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Ce <https://maps.google.com/?q=n+Cancer+Research+Ce&entry=gmail&source=g>nter 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319
Kushal K. Dey Graduate Student 5 th Year, Department of Statistics University of Chicago Contact: +1 312-709-0680 | kkdey at uchicago.edu [[alternative HTML version deleted]]