Hi Mike,
On 10/22/2014 10:54 AM, Mike wrote:
Hi, I am not able to find the cause of the following warning message Warning: no function found corresponding to methods exports from ?flowWorkspace? for: ?sampleNames<-? First of all, replacement method 'sampleNames<-' does not seem to be used by `QUALIFIER` anywhere. Secondly, adding 'importFrom(Biobase,"sampleNames<-")' to NAMESPACE file does not resolve the issue.
Adding this to the NAMESPACE file in flowWorkspace should solve the problem. Note that a bunch of other imports are missing from that file: read.ncdfFlowSet flowFrame (the function) flowSet (the function) nodes ncdfFlowList varMetadata phenoData<- etc... See the "no visible global function definition" notes in the online CHECK report for flowWorkspace for the complete list. Same problem with the NAMESPACE file in QUALIFIER. Missing imports: sampleNames pData getData setcolorder rbindlist getSample getNodes parameters getGate data.table exprs rename standard.theme load_gs trellis.par.get current.panel.limits panel.polygon panel.segments etc... See the "no visible global function definition" notes in the online CHECK report for QUALIFIER for the complete list. Looks like both NAMESPACE files were generated by roxygen2 (4.0.2) so something must have gone wrong when that tool was used. HTH, H.
Any suggestion? Mike [[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319