Hi all, My package tarball is only 4.4 MB when I build it without building the vignettes. However, it increases to 7 MB when I build the vignettes. My vignette is a html_document that creates several images and is 3.8 MB uncompressed so quite large. Since my package is under the 5 MB limit without building vignettes, would that be considered small enough to pass or must the size of the vignettes be counted as part of the package size? Cheers, Richard
[Bioc-devel] Vignette files causing package to exceed 5 MB size limit
4 messages · Richard Heery, Shepherd, Lori, Boyi Guo
The data is now available in the hub
query(eh, "TumourMethData")
ExperimentHub with 4 records
# snapshotDate(): 2023-10-06
# $dataprovider: University of California San Francisco, Washington Universi...
# $species: Homo sapiens
# $rdataclass: RangedSummarizedExperiment
# additional mcols(): taxonomyid, genome, description,
# coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
# rdatapath, sourceurl, sourcetype
# retrieve records with, e.g., 'object[["EH8424"]]'
title
EH8424 | tcga_wgbs_hg38
EH8525 | mcrpc_wgbs_hg38
EH8526 | cpgea_wgbs_hg38
EH8527 | cao_esophageal_wgbs_hg19
Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Richard Heery <richardheery at gmail.com>
Sent: Friday, October 6, 2023 12:28 PM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Vignette files causing package to exceed 5 MB size limit
Sent: Friday, October 6, 2023 12:28 PM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Vignette files causing package to exceed 5 MB size limit
Hi all,
My package tarball is only 4.4 MB when I build it without building the
vignettes. However, it increases to 7 MB when I build the vignettes. My
vignette is a html_document that creates several images and is 3.8 MB
uncompressed so quite large. Since my package is under the 5 MB limit
without building vignettes, would that be considered small enough to pass
or must the size of the vignettes be counted as part of the package size?
Cheers,
Richard
[[alternative HTML version deleted]]
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Sorry about that. I had two emails back to back and responded to the wrong one. Is there a way to create and save and compress the images? Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Richard Heery <richardheery at gmail.com>
Sent: Friday, October 6, 2023 12:28 PM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Vignette files causing package to exceed 5 MB size limit
Sent: Friday, October 6, 2023 12:28 PM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Vignette files causing package to exceed 5 MB size limit
Hi all,
My package tarball is only 4.4 MB when I build it without building the
vignettes. However, it increases to 7 MB when I build the vignettes. My
vignette is a html_document that creates several images and is 3.8 MB
uncompressed so quite large. Since my package is under the 5 MB limit
without building vignettes, would that be considered small enough to pass
or must the size of the vignettes be counted as part of the package size?
Cheers,
Richard
[[alternative HTML version deleted]]
_______________________________________________
Bioc-devel at r-project.org mailing list
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3 days later
Can you try to add ` fig.retina = NULL` in your `knitr::opts_chunk$set()` setting? That helped me to reduce the size of images in image-heavy vignettes. Source: http://zevross.com/blog/2017/06/19/tips-and-tricks-for-working-with-images-and-figures-in-r-markdown-documents/#the-fig.retina-argument-is-a-resolution-multiplier Best, Boyi On Fri, Oct 6, 2023 at 12:28?PM Richard Heery <richardheery at gmail.com> wrote:
Hi all,
My package tarball is only 4.4 MB when I build it without building the
vignettes. However, it increases to 7 MB when I build the vignettes. My
vignette is a html_document that creates several images and is 3.8 MB
uncompressed so quite large. Since my package is under the 5 MB limit
without building vignettes, would that be considered small enough to pass
or must the size of the vignettes be counted as part of the package size?
Cheers,
Richard
[[alternative HTML version deleted]]
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