On Wed, Jul 11, 2012 at 1:07 AM, Andreas Heider
<aheider at trm.uni-leipzig.de> wrote:
Oh, I'm sorry! I just saw, that GEOquery itself failed to built!
Yes, and this looks to be due to continuing problems with NCBI/GEO. This has been reported before (https://stat.ethz.ch/pipermail/bioconductor/2012-February/043247.html) and the suggestion was to wait a while; however this has been going on for a couple of days, so maybe contacting NCBI would be constructive. Dan
2012/7/11 Andreas Heider <aheider at trm.uni-leipzig.de>
Dear mailing list, I recieved the following error from compilaltion on lamb: "Error in function (type, msg, asError = TRUE) : Server denied you to change to the given directory Execution halted" Seems, that the compilation stops at chunk 3 of the vignette, however, I did not do any changes to my code in the last weeks. The chunk uses the GEOquery package, were there any fundamental changes to that package? Thanks, Andreas 2012/7/11 <BBS-noreply at bioconductor.org> [This is an automatically generated email. Please don't reply.]
Hi virtualArray maintainer, According to the "Build/check report" for BioC 2.10, the virtualArray package has the following problem(s): o ERROR for 'R CMD build' on lamb2. See the details here: http://bioconductor.org/checkResults/2.10/bioc-LATEST/virtualArray/lamb2-buildsrc.html Please take the time to address this then use your Subversion account when you are ready to commit a fix to your package. Notes: * This was the status of your package at the time this email was sent to you. Given that the online report is updated daily (in normal conditions) you could see something different when you visit the URL(s) above, especially if you do so several days after you received this email. * It is possible that the problems reported in this report are false positives, either because another package (from CRAN or Bioconductor) breaks your package (if yours depends on it) or because of a Build System problem. If this is the case, then you can ignore this email. * Please check the report again 24h after you've committed your changes to the package and make sure that all the problems have gone. * If you have questions about this report or need help with the maintenance of your package, please use the Bioc-devel mailing list: http://bioconductor.org/help/mailing-list/ (all package maintainers are requested to subscribe to this list) Thanks for contributing to the Bioconductor project!
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