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[Bioc-devel] Bioconductor 3.17 requires R 4.3?

4 messages · Y-h. Taguchi, Lluís Revilla, Shepherd, Lori

Original
Y-h. Taguchi
# 
Hi, people,

I have released TDbasedUFE

https://doi.org/doi:10.18129/B9.bioc.TDbasedUFE

for Bioc 3.17.

In order to install this package, it says

To install this package, start R (version "4.3") and enter:

but the latest R is 4.2.2 and in

Bioconductor - Install <https://bioconductor.org/install/>

"The development version of *Bioconductor* is version *3.17*; it works with
*R* version 4.2.0."

Bioc 3.17 works under R 4.2 or 4.3 ? The information is conflicting.

If Bioc 3.17 requires  R 4.3, where is it?

I am glad if you can help me on this issue.

Yours, tag
Lluís Revilla
# 
Dear Tag,

Congratulations for your successful submission of TDbasedUFE!

Your package was accepted and included in the devel branch of Bioconductor:
See this document about what to do now:
https://contributions.bioconductor.org/bioconductor-package-submissions.html#afteraccept
The devel version of Biocondutor will be 3.17 which will work with R 4.3
(The source code of R 4.3  is here: http://svn.r-project.org/R/trunk/) .
R 4.3 is in development. Once released, Bioconductor 3.17 will be released,
probably around April.
See this document about working with devel branch of Bioconductor and how
releases work:
https://contributions.bioconductor.org/use-devel.html?q=devel#which-version-of-r

The current release of Bioconductor is 3.16 which works with R-4.2.
You can see here all the information about past releases:
https://www.bioconductor.org/about/release-announcements/
Your package is not included in the 3.16 release because it was just
accepted.

I hope this helps.

Llu?s
On Fri, 24 Feb 2023 at 10:56, Y-h. Taguchi <tag at granular.com> wrote:

            

      
      
      
    

        

      
      
    

        

  
  


  


      

    

    

      
      

        


  

        

      Y-h. Taguchi
    

    

      
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Hi people,

I have found that

https://cran.r-project.org/src/base-prerelease/R-devel.tar.gz

can be used as R 4.3. But the statement

"The development version of *Bioconductor* is version *3.17*; it works with
*R* version 4.2.0."

in

Bioconductor - Install <https://bioconductor.org/install/>

is better to be fixed. It is a lie.

Yours, tag.


2023?2?24?(?) 18:56 Y-h. Taguchi <tag at granular.com>:

            

      
      
      
    

        

  
    

      
      
    

  


  


      

    

    

      
      

        


  

        

      Shepherd, Lori
    

    

      
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We apologize for the confusion. I have made the necessary adjustments and it should be corrected on the webpage within the next hour or so.




Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263