[Bioc-devel] news on tidybulk?
8 messages · Shepherd, Lori, Vincent Carey, stefano iacus
Is there a question here? Nothing came through in the body of the email? Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Stefano Mangiola <mangiolastefano at gmail.com>
Sent: Tuesday, March 24, 2020 7:28 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] news on tidybulk?
Sent: Tuesday, March 24, 2020 7:28 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] news on tidybulk?
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
I am weak on finding logs, but at https://github.com/Bioconductor/Contributions/issues?q=is%3Aissue+is%3Aopen+tidybulk I see the package is in an error state. Can you fix that? On Tue, Mar 24, 2020 at 7:31 AM Stefano Mangiola <mangiolastefano at gmail.com> wrote:
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I think "header says it all" may be intended ... the question is whether it is accepted. since the package seems to be in error state I am not sure it can move forward at this time On Tue, Mar 24, 2020 at 8:22 AM Shepherd, Lori <
Lori.Shepherd at roswellpark.org> wrote:
Is there a question here? Nothing came through in the body of the email? Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
________________________________ From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Stefano Mangiola <mangiolastefano at gmail.com> Sent: Tuesday, March 24, 2020 7:28 AM To: bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: [Bioc-devel] news on tidybulk? _______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
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Hello, I have asked advise for a quite mysterious error in Windows and I have been told to wait, and I did not receive further reply. And I received a positive feedback dvantwisk <https://github.com/dvantwisk> commented 13 days ago <https://github.com/Bioconductor/Contributions/issues/1330#issuecomment-598168098> I apologize for the wait. I've reviewed your package and found that it is excellently written. I really don't have much to add. My only question is as follows: And after replying I did not receive a reply. I have pushed an updated version. Please don't neglect this package. It is important that it will be included in this release of Bioconductor. Best wishes. *Stefano * Stefano Mangiola | Postdoctoral fellow Papenfuss Laboratory The Walter Eliza Hall Institute of Medical Research +61 (0)466452544 Il giorno mar 24 mar 2020 alle ore 23:24 Vincent Carey < stvjc at channing.harvard.edu> ha scritto:
I think "header says it all" may be intended ... the question is whether it is accepted. since the package seems to be in error state I am not sure it can move forward at this time On Tue, Mar 24, 2020 at 8:22 AM Shepherd, Lori < Lori.Shepherd at roswellpark.org> wrote:
Is there a question here? Nothing came through in the body of the email? Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
________________________________ From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Stefano Mangiola <mangiolastefano at gmail.com> Sent: Tuesday, March 24, 2020 7:28 AM To: bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: [Bioc-devel] news on tidybulk? _______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
The information in this e-mail is intended only for th...{{dropped:15}}
Hello, tidybulk passed all checks now. Sorry I was waiting for a response to my answer to a reviewer's question before sending updated versions, it was the wrong strategy. Please let me know if anything else is needed. Best wishes. *Stefano * Stefano Mangiola | Postdoctoral fellow Papenfuss Laboratory The Walter Eliza Hall Institute of Medical Research +61 (0)466452544 Il giorno mer 25 mar 2020 alle ore 12:28 stefano <mangiolastefano at gmail.com> ha scritto:
Hello, I have asked advise for a quite mysterious error in Windows and I have been told to wait, and I did not receive further reply. And I received a positive feedback dvantwisk <https://github.com/dvantwisk> commented 13 days ago <https://github.com/Bioconductor/Contributions/issues/1330#issuecomment-598168098> I apologize for the wait. I've reviewed your package and found that it is excellently written. I really don't have much to add. My only question is as follows: And after replying I did not receive a reply. I have pushed an updated version. Please don't neglect this package. It is important that it will be included in this release of Bioconductor. Best wishes. *Stefano * Stefano Mangiola | Postdoctoral fellow Papenfuss Laboratory The Walter Eliza Hall Institute of Medical Research +61 (0)466452544 Il giorno mar 24 mar 2020 alle ore 23:24 Vincent Carey < stvjc at channing.harvard.edu> ha scritto:
I think "header says it all" may be intended ... the question is whether it is accepted. since the package seems to be in error state I am not sure it can move forward at this time On Tue, Mar 24, 2020 at 8:22 AM Shepherd, Lori < Lori.Shepherd at roswellpark.org> wrote:
Is there a question here? Nothing came through in the body of the email? Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
________________________________ From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Stefano Mangiola <mangiolastefano at gmail.com> Sent: Tuesday, March 24, 2020 7:28 AM To: bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: [Bioc-devel] news on tidybulk? _______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
The information in this e-mail is intended only for t...{{dropped:17}}
1 day later
Thanks a lot for the acceptance, and the time spent on review. Although my Bioconductor and github accounts share an ssh key I still get _____________________ rstudio-2 251 % git remote add upstream git at git.bioconductor.org: packages/tidybulk.git rstudio-2 254 % git fetch upstream Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. ________________________ Thanks for the assistance. Best wishes. *Stefano * Stefano Mangiola | Postdoctoral fellow Papenfuss Laboratory The Walter Eliza Hall Institute of Medical Research +61 (0)466452544 Il giorno mer 25 mar 2020 alle ore 14:11 stefano <mangiolastefano at gmail.com> ha scritto:
Hello, tidybulk passed all checks now. Sorry I was waiting for a response to my answer to a reviewer's question before sending updated versions, it was the wrong strategy. Please let me know if anything else is needed. Best wishes. *Stefano * Stefano Mangiola | Postdoctoral fellow Papenfuss Laboratory The Walter Eliza Hall Institute of Medical Research +61 (0)466452544 Il giorno mer 25 mar 2020 alle ore 12:28 stefano < mangiolastefano at gmail.com> ha scritto:
Hello, I have asked advise for a quite mysterious error in Windows and I have been told to wait, and I did not receive further reply. And I received a positive feedback dvantwisk <https://github.com/dvantwisk> commented 13 days ago <https://github.com/Bioconductor/Contributions/issues/1330#issuecomment-598168098> I apologize for the wait. I've reviewed your package and found that it is excellently written. I really don't have much to add. My only question is as follows: And after replying I did not receive a reply. I have pushed an updated version. Please don't neglect this package. It is important that it will be included in this release of Bioconductor. Best wishes. *Stefano * Stefano Mangiola | Postdoctoral fellow Papenfuss Laboratory The Walter Eliza Hall Institute of Medical Research +61 (0)466452544 Il giorno mar 24 mar 2020 alle ore 23:24 Vincent Carey < stvjc at channing.harvard.edu> ha scritto:
I think "header says it all" may be intended ... the question is whether it is accepted. since the package seems to be in error state I am not sure it can move forward at this time On Tue, Mar 24, 2020 at 8:22 AM Shepherd, Lori < Lori.Shepherd at roswellpark.org> wrote:
Is there a question here? Nothing came through in the body of the email? Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
________________________________ From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Stefano Mangiola <mangiolastefano at gmail.com> Sent: Tuesday, March 24, 2020 7:28 AM To: bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: [Bioc-devel] news on tidybulk? _______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
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OK couple of "=" were missing. I think I completed the upload. Thanks a lot. Best wishes. *Stefano * Stefano Mangiola | Postdoctoral fellow Papenfuss Laboratory The Walter Eliza Hall Institute of Medical Research +61 (0)466452544 Il giorno gio 26 mar 2020 alle ore 18:15 stefano <mangiolastefano at gmail.com> ha scritto:
Thanks a lot for the acceptance, and the time spent on review. Although my Bioconductor and github accounts share an ssh key I still get
_____________________ rstudio-2 251 % git remote add upstream git at git.bioconductor.org: packages/tidybulk.git rstudio-2 254 % git fetch upstream Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. ________________________ Thanks for the assistance. Best wishes. *Stefano * Stefano Mangiola | Postdoctoral fellow Papenfuss Laboratory The Walter Eliza Hall Institute of Medical Research +61 (0)466452544 Il giorno mer 25 mar 2020 alle ore 14:11 stefano < mangiolastefano at gmail.com> ha scritto: Hello, tidybulk passed all checks now. Sorry I was waiting for a response to my answer to a reviewer's question before sending updated versions, it was the wrong strategy. Please let me know if anything else is needed. Best wishes. *Stefano * Stefano Mangiola | Postdoctoral fellow Papenfuss Laboratory The Walter Eliza Hall Institute of Medical Research +61 (0)466452544 Il giorno mer 25 mar 2020 alle ore 12:28 stefano < mangiolastefano at gmail.com> ha scritto: Hello, I have asked advise for a quite mysterious error in Windows and I have been told to wait, and I did not receive further reply. And I received a positive feedback dvantwisk <https://github.com/dvantwisk> commented 13 days ago <https://github.com/Bioconductor/Contributions/issues/1330#issuecomment-598168098> I apologize for the wait. I've reviewed your package and found that it is excellently written. I really don't have much to add. My only question is as follows: And after replying I did not receive a reply. I have pushed an updated version. Please don't neglect this package. It is important that it will be included in this release of Bioconductor. Best wishes. *Stefano * Stefano Mangiola | Postdoctoral fellow Papenfuss Laboratory The Walter Eliza Hall Institute of Medical Research +61 (0)466452544 Il giorno mar 24 mar 2020 alle ore 23:24 Vincent Carey < stvjc at channing.harvard.edu> ha scritto: I think "header says it all" may be intended ... the question is whether it is accepted. since the package seems to be in error state I am not sure it can move forward at this time On Tue, Mar 24, 2020 at 8:22 AM Shepherd, Lori < Lori.Shepherd at roswellpark.org> wrote: Is there a question here? Nothing came through in the body of the email? Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Stefano Mangiola <mangiolastefano at gmail.com> Sent: Tuesday, March 24, 2020 7:28 AM To: bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: [Bioc-devel] news on tidybulk? _______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.