[Bioc-devel] JAGS 4.X.Y not installed on Windows (tokay1)

Hi Yu,

On 09/22/2016 02:15 PM, Yu Kong wrote:

Dear BioConductor community,

My package (MADSEQ) passed the build on Linux (*malbec1*) and Mac
(*morelia*)
build servers. However it fails on Windows (tokay1) server for multiple
days. Our package is a Bayesian model depends on JAGS sampler. The error
message said

"error: Failed to locate any version of JAGS version 4
The rjags package is just an interface to the JAGS library
Make sure you have installed JAGS-4.x.y.exe (for any x >=0, y>=0) from
http://www.sourceforge.net/projects/mcmc-jags/files"

Any help or suggestions would be really appreciated!

I will install JAGS on tokay1 today after the builds finish.

Just to clarify: your package depends on CRAN package rjags, which
requires JAGS. But does your package *directly* depend on JAGS i.e.
does it make calls to JAGS directly? Or does it use JAGS only thru
the rjags package? The difference is subtle but important. If the
latter, then you shouldn't have

  SystemRequirements: JAGS(>=4.2.0)http://mcmc-jags.sourceforge.net/

in your DESCRIPTION file. It's the responsibility of the rjags package
to specify this system requirement, which it does with the following
line:

  SystemRequirements: JAGS 4.x.y

Cheers,
H.

Thanks,
Yu

http://bioconductor.org/checkResults/devel/bioc-LATEST/
MADSEQ/tokay1-buildsrc.html
http://bioconductor.org/packages/3.4/bioc/html/MADSEQ.html

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--
Herv? Pag?s

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages at fredhutch.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319

Hi Herv?,

Thank you so much for help. My package uses JAGS thru the rjags package.

Thanks,
Yu

On Fri, Sep 23, 2016 at 2:59 AM, Herv? Pag?s <hpages at fredhutch.org
<mailto:hpages at fredhutch.org>> wrote:

    Hi Yu,

    On 09/22/2016 02:15 PM, Yu Kong wrote:

        Dear BioConductor community,

        My package (MADSEQ) passed the build on Linux (*malbec1*) and
        Mac (*morelia*)
        build servers. However it fails on Windows (tokay1) server for
        multiple
        days. Our package is a Bayesian model depends on JAGS sampler.
        The error
        message said

        "error: Failed to locate any version of JAGS version 4
        The rjags package is just an interface to the JAGS library
        Make sure you have installed JAGS-4.x.y.exe (for any x >=0,
        y>=0) from
        http://www.sourceforge.net/projects/mcmc-jags/files
        <http://www.sourceforge.net/projects/mcmc-jags/files>"

        Any help or suggestions would be really appreciated!


    I will install JAGS on tokay1 today after the builds finish.

    Just to clarify: your package depends on CRAN package rjags, which
    requires JAGS. But does your package *directly* depend on JAGS i.e.
    does it make calls to JAGS directly? Or does it use JAGS only thru
    the rjags package? The difference is subtle but important. If the
    latter, then you shouldn't have

      SystemRequirements: JAGS(>=4.2.0)http://mcmc-jags.sourceforge.net/
    <http://mcmc-jags.sourceforge.net/>

    in your DESCRIPTION file. It's the responsibility of the rjags package
    to specify this system requirement, which it does with the following
    line:

      SystemRequirements: JAGS 4.x.y

    Cheers,
    H.


        Thanks,
        Yu

        http://bioconductor.org/checkResults/devel/bioc-LATEST/MADSEQ/tokay1-buildsrc.html
        <http://bioconductor.org/checkResults/devel/bioc-LATEST/MADSEQ/tokay1-buildsrc.html>
        http://bioconductor.org/packages/3.4/bioc/html/MADSEQ.html
        <http://bioconductor.org/packages/3.4/bioc/html/MADSEQ.html>

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