Hello Bioconductor developers, We are still on track for Bioconductor Release 3.13 for this Thursday May 20th. This means that tonight is the last day to commit changes to the devel branch before creating of the RELEASE_3_13 versions of your packages. And any changes you make to your packages at this point will not be reflected in a build report before we branch. There will be a temporary code freeze tomorrow morning (EST) while the branching for RELEASE_3_13 occurs automatically by the core team. You will receive emails when the freeze occurs and when commits to the branches can resume. As clarification, you will still be able to commit to the release 3.13 branch and the devel branch throughout the next release cycle. But any packages that have not been fixed for failures or bugs in devel would then have to be fixed/uploaded to both the RELEASE_3_13 branch and the devel master branch. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
[Bioc-devel] Last day to make commit before the RELEASE_3_13
5 messages · Shepherd, Lori, Fabricio de Almeida, Martin, Tiphaine
Hi, I submitted my update of my package to master Sunday (1.23.1). I did not see a new update in build/check report (http://bioconductor.org/checkResults/devel/bioc-LATEST/coMET/) Did I miss something when I submit it? Thanks, Tiphaine -----Original Message----- From: Bioc-devel <bioc-devel-bounces at r-project.org> On Behalf Of Kern, Lori Sent: Tuesday, May 18, 2021 7:13 AM To: bioc-devel at r-project.org Subject: [Bioc-devel] Last day to make commit before the RELEASE_3_13 USE CAUTION: External Message. Hello Bioconductor developers, We are still on track for Bioconductor Release 3.13 for this Thursday May 20th. This means that tonight is the last day to commit changes to the devel branch before creating of the RELEASE_3_13 versions of your packages. And any changes you make to your packages at this point will not be reflected in a build report before we branch. There will be a temporary code freeze tomorrow morning (EST) while the branching for RELEASE_3_13 occurs automatically by the core team. You will receive emails when the freeze occurs and when commits to the branches can resume. As clarification, you will still be able to commit to the release 3.13 branch and the devel branch throughout the next release cycle. But any packages that have not been fixed for failures or bugs in devel would then have to be fixed/uploaded to both the RELEASE_3_13 branch and the devel master branch. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel at r-project.org mailing list https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=shNJtf5dKgNcPZ6Yh64b-A&r=BH3UNPUNhOc-niJT9d00EAx3ah5AHfQlhQQ_SHtjigA&m=eaCULiTxavrVFA_k5rzyIu8OQHqCyR4X8ZkPzSJvT3Y&s=LLeH1zl0Z6mOeUFQge38J5i0CPJUlP8XiY4L-wiB-qI&e=
Tiphaine, did you remember to bump package version in your DESCRIPTION file after making the changes? ========================= Fabr?cio de Almeida Silva Undergraduate degree in Biological Sciences (UENF) MSc. candidate in Plant Biotechnology (PGBV/UENF - RJ/Brazil) Laborat?rio de Qu?mica e Fun??o de Prote?nas e Pept?deos (LQFPP/CBB/UENF - RJ/Brazil) Lattes CNPq: http://lattes.cnpq.br/3119358824056108 Personal website: https://almeidasilvaf.github.io/home/
De: Bioc-devel <bioc-devel-bounces at r-project.org> em nome de Martin, Tiphaine <tiphaine.martin at mssm.edu>
Enviado: ter?a-feira, 18 de maio de 2021 09:32 Para: bioc-devel at r-project.org <bioc-devel at r-project.org> Assunto: Re: [Bioc-devel] Last day to make commit before the RELEASE_3_13 Hi, I submitted my update of my package to master Sunday (1.23.1). I did not see a new update in build/check report (http://bioconductor.org/checkResults/devel/bioc-LATEST/coMET/) Did I miss something when I submit it? Thanks, Tiphaine -----Original Message----- From: Bioc-devel <bioc-devel-bounces at r-project.org> On Behalf Of Kern, Lori Sent: Tuesday, May 18, 2021 7:13 AM To: bioc-devel at r-project.org Subject: [Bioc-devel] Last day to make commit before the RELEASE_3_13 USE CAUTION: External Message. Hello Bioconductor developers, We are still on track for Bioconductor Release 3.13 for this Thursday May 20th. This means that tonight is the last day to commit changes to the devel branch before creating of the RELEASE_3_13 versions of your packages. And any changes you make to your packages at this point will not be reflected in a build report before we branch. There will be a temporary code freeze tomorrow morning (EST) while the branching for RELEASE_3_13 occurs automatically by the core team. You will receive emails when the freeze occurs and when commits to the branches can resume. As clarification, you will still be able to commit to the release 3.13 branch and the devel branch throughout the next release cycle. But any packages that have not been fixed for failures or bugs in devel would then have to be fixed/uploaded to both the RELEASE_3_13 branch and the devel master branch. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=shNJtf5dKgNcPZ6Yh64b-A&r=BH3UNPUNhOc-niJT9d00EAx3ah5AHfQlhQQ_SHtjigA&m=eaCULiTxavrVFA_k5rzyIu8OQHqCyR4X8ZkPzSJvT3Y&s=LLeH1zl0Z6mOeUFQge38J5i0CPJUlP8XiY4L-wiB-qI&e= _______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
It looks like you just pushed the changes up Sunday May 16th. It can take up to 48 hours to get through the build report and landing page depending on the time of the push to our system because the builders only pull, build, check once per day. You missed the cut off to be on yesterday's report. I expect to see the updated version on today's report. See the top of this page for timing http://bioconductor.org/developers/how-to/troubleshoot-build-report/ Bioconductor - Troubleshooting Build Report<http://bioconductor.org/developers/how-to/troubleshoot-build-report/> Troubleshooting Build Report How and When does the builder pull? When will my changes propagate? Please remember the daily builder pulls, installs, builds, and checks ... bioconductor.org Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Martin, Tiphaine <tiphaine.martin at mssm.edu>
Sent: Tuesday, May 18, 2021 10:32 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] Last day to make commit before the RELEASE_3_13
Sent: Tuesday, May 18, 2021 10:32 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] Last day to make commit before the RELEASE_3_13
Hi, I submitted my update of my package to master Sunday (1.23.1). I did not see a new update in build/check report (http://secure-web.cisco.com/17AMCgK31b8cwSa9x6pbGruTkLWwGrTeu42AoLtib4FhptXpFa-f9vMSDnapiS4gIxwbiXLhPx-WZVbl8PXapb3fIqJQpLfbQYfUSo6Oxlk-1BNn5KQwfXLXmoaD6Bvl7YH2V_hEWV1JIGzEub1okwQIz6SagNlk31mQyKF3F6nb1ij0rex7VHbYacEGSbxthiLAGdagfkOOUcMfV_Z4uYBTxRUZ7mG3TVXbymEWOGya2n8P-8x2_5AeIDpDvOjFM1HnttZRilcN_dVr1MU2SznjnqUZjULBhXk4NcNGXO7xBoQqqr4qoEyuWMFxWH8Vzt2rqFEotbVlohOIN3Vh_JQ/http%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2FcoMET%2F) Did I miss something when I submit it? Thanks, Tiphaine -----Original Message----- From: Bioc-devel <bioc-devel-bounces at r-project.org> On Behalf Of Kern, Lori Sent: Tuesday, May 18, 2021 7:13 AM To: bioc-devel at r-project.org Subject: [Bioc-devel] Last day to make commit before the RELEASE_3_13 USE CAUTION: External Message. Hello Bioconductor developers, We are still on track for Bioconductor Release 3.13 for this Thursday May 20th. This means that tonight is the last day to commit changes to the devel branch before creating of the RELEASE_3_13 versions of your packages. And any changes you make to your packages at this point will not be reflected in a build report before we branch. There will be a temporary code freeze tomorrow morning (EST) while the branching for RELEASE_3_13 occurs automatically by the core team. You will receive emails when the freeze occurs and when commits to the branches can resume. As clarification, you will still be able to commit to the release 3.13 branch and the devel branch throughout the next release cycle. But any packages that have not been fixed for failures or bugs in devel would then have to be fixed/uploaded to both the RELEASE_3_13 branch and the devel master branch. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://secure-web.cisco.com/1yAJ1Ew34ir0-53X0xYhT0ozYRnulS26R-Dn9grNG1V9NNUYY7mc7sXitkm6FQtYhXOvyuDiSpDhDQgM1PCMgc9WWW8cawdpHNhDrlyHZ3TI7ONwhqKbwLlp9zH66fHlyRs0LGsN1zytQAowoJN0Krj1o2uniFYPjicmA-PEhz6PW8s78mOSvNwE1e-15Ja3qLsgOcmcsgyqfAIeu8OmpUpj3k_IoMICAtmDZV96uWrAobwErVrOsINm5aG5BFs9ARQPq57l5kKO37kcnB9sGPDZItEs1qe-rOXXMUbpkrHB4lO-pwhSVJq8jCUFCJANHEzUxbVMbKClU2-uf9t7hkQ/https%3A%2F%2Furldefense.proofpoint.com%2Fv2%2Furl%3Fu%3Dhttps-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel%26d%3DDwICAg%26c%3DshNJtf5dKgNcPZ6Yh64b-A%26r%3DBH3UNPUNhOc-niJT9d00EAx3ah5AHfQlhQQ_SHtjigA%26m%3DeaCULiTxavrVFA_k5rzyIu8OQHqCyR4X8ZkPzSJvT3Y%26s%3DLLeH1zl0Z6mOeUFQge38J5i0CPJUlP8XiY4L-wiB-qI%26e%3D _______________________________________________ Bioc-devel at r-project.org mailing list https://secure-web.cisco.com/1FA_BWxa4bnWiG9kc0rTgbHC9FU7hZe40-KhX8mFhIRJpYePOjyXtL0ZtdC_WWxW1H8NZmtaplLF1VBK3pq3nn-HF3p9peBP_gOqTIsOYE9i-INWV5VSoAOC5bL-IYkRs6_pSXx37utcfdFWieKlnikXFewx_sM8KQ66Tsoip_OmLw8rYWpJ8yu05_axSGjH-naftQSzi7MSZOXBG6_UjcMkKt_MVlCBNVphunbeIznb4pukKpbeUhEqTySeVoVZclZlb6cp-jvOcS2aUFa68iPfEuLieSpzLfYuhKphYkLXLmtQtYl-mZ-bjHt99NUcofDkPlTUaUBd3qUafv2wJBQ/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
Thanks a lot for this link and explanation Tiphaine ---------------------------------------------------------------- Tiphaine Martin Postdoc Fellow Parsons lab Department of Oncological Sciences The Tisch Cancer Institute at Mount Sinai Icahn School of Medicine at Mount Sinai Hess Center for Science and Medicine 1470 Madison Ave, 6th Floor New York, NY 10029 tel: 1- 212-824-9253 Email: tiphaine.martin at mssm.edu<mailto:tiphaine.martin at mssm.edu>
From: Kern, Lori <Lori.Shepherd at RoswellPark.org>
Sent: Tuesday, May 18, 2021 10:44 AM
To: Martin, Tiphaine <tiphaine.martin at mssm.edu>; bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: Last day to make commit before the RELEASE_3_13
Sent: Tuesday, May 18, 2021 10:44 AM
To: Martin, Tiphaine <tiphaine.martin at mssm.edu>; bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: Last day to make commit before the RELEASE_3_13
It looks like you just pushed the changes up Sunday May 16th. It can take up to 48 hours to get through the build report and landing page depending on the time of the push to our system because the builders only pull, build, check once per day. You missed the cut off to be on yesterday's report. I expect to see the updated version on today's report. See the top of this page for timing http://bioconductor.org/developers/how-to/troubleshoot-build-report/<https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_developers_how-2Dto_troubleshoot-2Dbuild-2Dreport_&d=DwMFAg&c=shNJtf5dKgNcPZ6Yh64b-A&r=BH3UNPUNhOc-niJT9d00EAx3ah5AHfQlhQQ_SHtjigA&m=YRruJf2R7wFYfv_y1AMqK7Xb2Dp8QBIfClByi9rv2oo&s=JWEpYDhaacBe5MhNLVwGlwfr-1mtbG0NBx84Yl8dyGU&e=> Bioconductor - Troubleshooting Build Report<https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_developers_how-2Dto_troubleshoot-2Dbuild-2Dreport_&d=DwMFAg&c=shNJtf5dKgNcPZ6Yh64b-A&r=BH3UNPUNhOc-niJT9d00EAx3ah5AHfQlhQQ_SHtjigA&m=YRruJf2R7wFYfv_y1AMqK7Xb2Dp8QBIfClByi9rv2oo&s=JWEpYDhaacBe5MhNLVwGlwfr-1mtbG0NBx84Yl8dyGU&e=> Troubleshooting Build Report How and When does the builder pull? When will my changes propagate? Please remember the daily builder pulls, installs, builds, and checks ... bioconductor.org<https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org&d=DwQFAg&c=shNJtf5dKgNcPZ6Yh64b-A&r=BH3UNPUNhOc-niJT9d00EAx3ah5AHfQlhQQ_SHtjigA&m=YRruJf2R7wFYfv_y1AMqK7Xb2Dp8QBIfClByi9rv2oo&s=T69zZoxDD5dlVR-PhYSTN2ssRN_ryN0PDugTqO6fxZY&e=> Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Martin, Tiphaine <tiphaine.martin at mssm.edu> Sent: Tuesday, May 18, 2021 10:32 AM To: bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: Re: [Bioc-devel] Last day to make commit before the RELEASE_3_13 Hi, I submitted my update of my package to master Sunday (1.23.1). I did not see a new update in build/check report (http://secure-web.cisco.com/17AMCgK31b8cwSa9x6pbGruTkLWwGrTeu42AoLtib4FhptXpFa-f9vMSDnapiS4gIxwbiXLhPx-WZVbl8PXapb3fIqJQpLfbQYfUSo6Oxlk-1BNn5KQwfXLXmoaD6Bvl7YH2V_hEWV1JIGzEub1okwQIz6SagNlk31mQyKF3F6nb1ij0rex7VHbYacEGSbxthiLAGdagfkOOUcMfV_Z4uYBTxRUZ7mG3TVXbymEWOGya2n8P-8x2_5AeIDpDvOjFM1HnttZRilcN_dVr1MU2SznjnqUZjULBhXk4NcNGXO7xBoQqqr4qoEyuWMFxWH8Vzt2rqFEotbVlohOIN3Vh_JQ/http%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2FcoMET%2F<https://urldefense.proofpoint.com/v2/url?u=http-3A__secure-2Dweb.cisco.com_17AMCgK31b8cwSa9x6pbGruTkLWwGrTeu42AoLtib4FhptXpFa-2Df9vMSDnapiS4gIxwbiXLhPx-2DWZVbl8PXapb3fIqJQpLfbQYfUSo6Oxlk-2D1BNn5KQwfXLXmoaD6Bvl7YH2V-5FhEWV1JIGzEub1okwQIz6SagNlk31mQyKF3F6nb1ij0rex7VHbYacEGSbxthiLAGdagfkOOUcMfV-5FZ4uYBTxRUZ7mG3TVXbymEWOGya2n8P-2D8x2-5F5AeIDpDvOjFM1HnttZRilcN-5FdVr1MU2SznjnqUZjULBhXk4NcNGXO7xBoQqqr4qoEyuWMFxWH8Vzt2rqFEotbVlohOIN3Vh-5FJQ_http-253A-252F-252Fbioconductor.org-252FcheckResults-252Fdevel-252Fbioc-2DLATEST-252FcoMET-252F&d=DwMFAg&c=shNJtf5dKgNcPZ6Yh64b-A&r=BH3UNPUNhOc-niJT9d00EAx3ah5AHfQlhQQ_SHtjigA&m=YRruJf2R7wFYfv_y1AMqK7Xb2Dp8QBIfClByi9rv2oo&s=DwiaGGpLLe8DdAPI_xNdmhKo-pXFVldQPpiFD3OG_ik&e=>) Did I miss something when I submit it? Thanks, Tiphaine -----Original Message----- From: Bioc-devel <bioc-devel-bounces at r-project.org> On Behalf Of Kern, Lori Sent: Tuesday, May 18, 2021 7:13 AM To: bioc-devel at r-project.org Subject: [Bioc-devel] Last day to make commit before the RELEASE_3_13 USE CAUTION: External Message. Hello Bioconductor developers, We are still on track for Bioconductor Release 3.13 for this Thursday May 20th. This means that tonight is the last day to commit changes to the devel branch before creating of the RELEASE_3_13 versions of your packages. And any changes you make to your packages at this point will not be reflected in a build report before we branch. There will be a temporary code freeze tomorrow morning (EST) while the branching for RELEASE_3_13 occurs automatically by the core team. You will receive emails when the freeze occurs and when commits to the branches can resume. As clarification, you will still be able to commit to the release 3.13 branch and the devel branch throughout the next release cycle. But any packages that have not been fixed for failures or bugs in devel would then have to be fixed/uploaded to both the RELEASE_3_13 branch and the devel master branch. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. 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