Hello Bioconductor, We have added DOI's for packages on Bioconductor package landing pages. The DOI will get generated automatically when a package is accepted to Bioconductor. This is the recommended reference to use for publication/citations/etc. The DOI link should automatically redirect to the current release version of a package (or devel if the package is not yet in release). Thank you, Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
[Bioc-devel] DOI for packages
4 messages · Shepherd, Lori, Laurent Gatto, Martin Morgan
On 19 October 2017 13:22, Shepherd, Lori wrote:
Hello Bioconductor, We have added DOI's for packages on Bioconductor package landing pages. The DOI will get generated automatically when a package is accepted to Bioconductor. This is the recommended reference to use for publication/citations/etc. The DOI link should automatically redirect to the current release version of a package (or devel if the package is not yet in release).
Thank you for this. Are there any plans to add the DOI to the DESCRIPTION file and automatically include it to the default citation() output? Laurent
Thank you, Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Laurent Gatto | @lgatt0 http://cpu.sysbiol.cam.ac.uk/ http://lgatto.github.io/
Many Thanks to Sean Davis for coming up with how to generate and providing the infastructure! Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Laurent Gatto <lg390 at cam.ac.uk>
Sent: Thursday, October 19, 2017 3:10:52 PM
To: bioc-devel at r-project.org
Cc: Shepherd, Lori
Subject: EXTERNAL: Re: [Bioc-devel] DOI for packages
Sent: Thursday, October 19, 2017 3:10:52 PM
To: bioc-devel at r-project.org
Cc: Shepherd, Lori
Subject: EXTERNAL: Re: [Bioc-devel] DOI for packages
On 19 October 2017 13:22, Shepherd, Lori wrote: > Hello Bioconductor, > > We have added DOI's for packages on Bioconductor package landing > pages. The DOI will get generated automatically when a package is > accepted to Bioconductor. This is the recommended reference to use for > publication/citations/etc. The DOI link should automatically redirect > to the current release version of a package (or devel if the package > is not yet in release). Thank you for this. Are there any plans to add the DOI to the DESCRIPTION file and automatically include it to the default citation() output? Laurent > Thank you, > > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Cancer Institute > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > > > This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel -- Laurent Gatto | @lgatt0 http://cpu.sysbiol.cam.ac.uk/ http://lgatto.github.io/ This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
On 10/19/2017 03:10 PM, Laurent Gatto wrote:
On 19 October 2017 13:22, Shepherd, Lori wrote:
Hello Bioconductor, We have added DOI's for packages on Bioconductor package landing pages. The DOI will get generated automatically when a package is accepted to Bioconductor. This is the recommended reference to use for publication/citations/etc. The DOI link should automatically redirect to the current release version of a package (or devel if the package is not yet in release).
Thank you for this. Are there any plans to add the DOI to the DESCRIPTION file and automatically include it to the default citation() output?
This first part of this came up before. Any field can be added to the
DESCRIPTION file so one could add DOI:..., but since they are easily
generated by paste0("https://doi.org/doi:10.18129/B9.bioc.",
<package_name>) there seems to be limited utility.
I haven't looked, in detail, at what citation() does, and whether there
is scope for modifying this to accept and format arbitrary (or
particular) additional fields; it would be a topic for R-devel if there
was enough interest here.
An existing alternative is to provide a CITATION file with the
appropriate information, e.g., with citEntry() accepting argument
doi="10.17129/B9.bioc.YOUR_PACKAGE".
Martin
Laurent
Thank you, Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]]
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