Dear Bioconductor Core Team, I am the maintainer of the newly accepted package dominatR, currently present at https://github.com/VanBortleLab/dominatR The package was submitted and accepted in Bioconductor. This is the Issue for tracking: https://github.com/Bioconductor/Contributions/issues/3938 I was checking the building report on Bioconductor and there is one error during the building of the package https://bioconductor.org/checkResults/3.23/bioc-LATEST/dominatR/nebbiolo1-checksrc.html The problem, I thik it is very simple, but I am new on all this and I am a little bit confused about how to fix it, given that I didn't have this problem during the review process!. I would appreciate your help on this matter Thank you so much! * checking re-building of vignette outputs ... ERROR Error(s) in re-building vignettes: ... --- re-building ?dominatR.Rmd? using rmarkdown File ../man/figures/dominatR_logo.png not found in resource path Error: processing vignette 'dominatR.Rmd' failed with diagnostics: pandoc document conversion failed with error 99 --- failed re-building ?dominatR.Rmd? SUMMARY: processing the following file failed: ?dominatR.Rmd? Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... OK * DONE
[Bioc-devel] Problems fixing error package 'dominatR'
2 messages · Simón Lizarazo Chaparro, Shepherd, Lori
Not sure why this didn't occur during the review process but on quick glance it seems like you have a hard coded path to a figure in your man directory of your package. This would not be transportable/finable on other systems. You should include the image in say inst/images or inst/extdata and then use a system.file call to retrieve the file on any system. Cheers, Lori Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Sim?n Lizarazo Chaparro <silizarazoch at gmail.com>
Sent: Wednesday, November 5, 2025 5:14 PM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Problems fixing error package 'dominatR'
Sent: Wednesday, November 5, 2025 5:14 PM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Problems fixing error package 'dominatR'
Dear Bioconductor Core Team, I am the maintainer of the newly accepted package dominatR, currently present at https://secure-web.cisco.com/17yl48BPxojPKS-2m4Jz9xSh4q8dbmS4XrEJRO9Uizgo406_yQJtopCoYSmG9jXlLdzImgrpBJkcUoxGcV2MboTBuW_kFJcvt2HhHaq8rs2nvipsah7ugn38k_CPI7UTwbxAT52XTyhjMgZb-yTWO1sqANUb9Qym33CUZG5Lh-QJi9Zks93N_Edqe75Y79ESuLJC3PAfEiHELX8w6qQfk5vEOQ7cc_HVPOkz8CfdYaLEVzG5Fwc7fSyYdC5OSLQmZNKTxPl2cGzM_-6WSfl9nFiGsPlti2n5_aDeJe-fElgFUb2c0SNMRPGP4UjPZR5D4/https%3A%2F%2Fgithub.com%2FVanBortleLab%2FdominatR The package was submitted and accepted in Bioconductor. This is the Issue for tracking: https://secure-web.cisco.com/1iv6-Spkeota1Uk29f51g1IOTjtZgSrtvl-QZotYMetlyxkDQGIp_M93u_HUlzkywE6iBPBi2R8OJd47VlE4ywgR1Y6dqfnKTlXaRMF6jRXe0XFYBH9NMqi56JUxROrqniyYAtOZCftVzCFukOxU137CA23pHabSGH9wgItx1qm0uLO77Fw098EvATJWjP0XBq5CCXy5M45vGaJnrgroT5e9P5mUg7VuPHhBbzhzwsdTWwd-MfBXEVJOscBrZ5FiPpa7Ro88zTRSHlZhhsaOqsJ6MkKqiIrD8jNaiUEqYMyG_twRSbzYgd3D7tfcZhijV/https%3A%2F%2Fgithub.com%2FBioconductor%2FContributions%2Fissues%2F3938 I was checking the building report on Bioconductor and there is one error during the building of the package https://secure-web.cisco.com/1VwXcs6juFQzkjVRUREovH0G8yoQ79DZq9zvSWsW41lzoC8zl7vTxTRqKDB8BrbU7LvS8zw6ziZJfYhzgp-KdqIN1hGMtBPSFFfb2bJGJP6cRmGKbYefXwMXV9JvD3pmEJUQi0gymj38uy7vyMSEknc2MWUS_B3sGxIvJbYwjdxflRXHh2131YhAbI0DmKit-X0x9zsmp694xtL7ou-m6SUFllmOyj_XGKKGmrgutJti4xHTFsMT07lZfvKJib7C0CRfL7cZvyquuwXiWAYpz5YWcqexlIrIeXjB14JvwTsZcNhhkKphBVhUTri6SVywf/https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.23%2Fbioc-LATEST%2FdominatR%2Fnebbiolo1-checksrc.html The problem, I thik it is very simple, but I am new on all this and I am a little bit confused about how to fix it, given that I didn't have this problem during the review process!. I would appreciate your help on this matter Thank you so much! * checking re-building of vignette outputs ... ERROR Error(s) in re-building vignettes: ... --- re-building ?dominatR.Rmd? using rmarkdown File ../man/figures/dominatR_logo.png not found in resource path Error: processing vignette 'dominatR.Rmd' failed with diagnostics: pandoc document conversion failed with error 99 --- failed re-building ?dominatR.Rmd? SUMMARY: processing the following file failed: ?dominatR.Rmd? Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... OK * DONE [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://secure-web.cisco.com/1GtWCSs76MluOCkRAvmGQdezVGxgvhL-7QiA0IDHb7sJ3z9_DzFcPkHY4yY2Gyl-GJlX4xzG4t6qjlSb-W3iLIvEVS6kr7LOnpk3nWgnWj32UYuBZXiy9gBGL7DgSt2ppRRyXZ_ZKT_C9Djv-nYRZUpQgEnE_u-mlDhXof5jHSeV6fEBd2IMjhTxS0rOXSiV6FL59hO0rklJD0pBS5KO0U2XcXNR7mLhWfaxmBmcsycp-yFD6f0HIbdwE9JDpRjIqZ2cDhrAkhpj5oL6kaxlthAj5Gok7XTfnXUxV5mXq6zRTairT3KnYTRzCSE_RNSqx/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.