[Bioc-devel] BiocCheck

From: "Dan Tenenbaum" <dtenenba at fhcrc.org>
To: "Kasper Daniel Hansen" <kasperdanielhansen at gmail.com>
Cc: bioc-devel at r-project.org
Sent: Friday, June 13, 2014 4:24:27 PM
Subject: Re: [Bioc-devel] BiocCheck



----- Original Message -----

From: "Kasper Daniel Hansen" <kasperdanielhansen at gmail.com>
To: bioc-devel at r-project.org
Sent: Wednesday, May 28, 2014 7:20:00 AM
Subject: [Bioc-devel] BiocCheck

1) The hash bang in the BiocCheck script currently requires
intervention at
install time.

It would be much more convenient if the script could read of the
location
of R, in the same way as (say) the Sweave script can.  In fact, I
modified
the BiocCheck script as per the Sweave script but ran into problems
with
.BiocCheckFromCommandLine, and figured I better stop.

I've addressed this in BiocCheck 1.1.4. I just missed the build
system cutoff for tonight's builds so this will be available on
Sunday via biocLite().

2) Re. the checks for coding style: it would be convenient if there
was an
option (perhaps disabled by default, perhaps not) which lists the
offending
files for each "issue".

Still haven't gotten to this yet.

Dan

Best,
Kasper

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