hi, I pushed a change to rnaseqGene workflow and only winbuilder1 had a problem: * checking PDF version of manual ...Warning: running command '"C:/Progra~1/R/R-3.4.0/bin/x64/Rcmd.exe" Rd2pdf --batch --no-preview --build-dir="C:/Windows/TEMP/RtmpE9T1fB/Rd2pdff6059a733c8" --no-clean -o rnaseqGene-manual.pdf "C:/DOCBUILDER_TEMP/jenkins-rnaseqGene-label=winbuilder1-81/rnaseqGene.Rcheck/rnaseqGene"' had status 1 WARNING LaTeX errors when creating PDF version. This typically indicates Rd problems. * checking PDF version of manual without hyperrefs or index ...Warning: running command '"C:/Progra~1/R/R-3.4.0/bin/x64/Rcmd.exe" Rd2pdf --batch --no-preview --build-dir="C:/Windows/TEMP/RtmpE9T1fB/Rd2pdff603f1c7162" --no-clean --no-index -o rnaseqGene-manual.pdf C:/DOCBUILDER_TEMP/jenkins-rnaseqGene-label=winbuilder1-81/rnaseqGene.Rcheck/rnaseqGene' had status 1 ERROR Re-running with no redirection of stdout/stderr. Hmm ... looks like a package Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : pdflatex is not available Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : pdflatex is not available Error in running tools::texi2pdf() The full report: http://docbuilder.bioconductor.org:8080/job/rnaseqGene/label=winbuilder1/lastBuild/console thanks, Mike
[Bioc-devel] workflow builder error: winbuilder1 says "pdflatex is not available"
3 messages · Andrzej Oleś, Michael Love
Hi Mike, thanks for reporting this. Strange, not sure what the problem was because now I was able to rebuild the workflow without actually reinstalling or reconfiguring anything on the builder. Maybe this was a transient issue related to the fact that I updated the LaTeX distro on the builder some days ago. Best, Andrzej On Thu, Sep 14, 2017 at 6:08 PM, Michael Love <michaelisaiahlove at gmail.com> wrote:
hi, I pushed a change to rnaseqGene workflow and only winbuilder1 had a problem: * checking PDF version of manual ...Warning: running command '"C:/Progra~1/R/R-3.4.0/bin/x64/Rcmd.exe" Rd2pdf --batch --no-preview --build-dir="C:/Windows/TEMP/RtmpE9T1fB/Rd2pdff6059a733c8" --no-clean -o rnaseqGene-manual.pdf "C:/DOCBUILDER_TEMP/jenkins-rnaseqGene-label=winbuilder1- 81/rnaseqGene.Rcheck/rnaseqGene"' had status 1 WARNING LaTeX errors when creating PDF version. This typically indicates Rd problems. * checking PDF version of manual without hyperrefs or index ...Warning: running command '"C:/Progra~1/R/R-3.4.0/bin/x64/Rcmd.exe" Rd2pdf --batch --no-preview --build-dir="C:/Windows/TEMP/RtmpE9T1fB/Rd2pdff603f1c7162" --no-clean --no-index -o rnaseqGene-manual.pdf C:/DOCBUILDER_TEMP/jenkins-rnaseqGene-label=winbuilder1- 81/rnaseqGene.Rcheck/rnaseqGene' had status 1 ERROR Re-running with no redirection of stdout/stderr. Hmm ... looks like a package Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : pdflatex is not available Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : pdflatex is not available Error in running tools::texi2pdf() The full report: http://docbuilder.bioconductor.org:8080/job/rnaseqGene/label=winbuilder1/ lastBuild/console thanks, Mike
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Thank you for the quick fix and reply Andrzej. best, Mike
On Thu, Sep 14, 2017 at 6:30 PM, Andrzej Ole? <andrzej.oles at gmail.com> wrote:
Hi Mike, thanks for reporting this. Strange, not sure what the problem was because now I was able to rebuild the workflow without actually reinstalling or reconfiguring anything on the builder. Maybe this was a transient issue related to the fact that I updated the LaTeX distro on the builder some days ago. Best, Andrzej On Thu, Sep 14, 2017 at 6:08 PM, Michael Love <michaelisaiahlove at gmail.com> wrote:
hi, I pushed a change to rnaseqGene workflow and only winbuilder1 had a problem: * checking PDF version of manual ...Warning: running command '"C:/Progra~1/R/R-3.4.0/bin/x64/Rcmd.exe" Rd2pdf --batch --no-preview --build-dir="C:/Windows/TEMP/RtmpE9T1fB/Rd2pdff6059a733c8" --no-clean -o rnaseqGene-manual.pdf "C:/DOCBUILDER_TEMP/jenkins-rnaseqGene-label=winbuilder1-81/rnaseqGene.Rcheck/rnaseqGene"' had status 1 WARNING LaTeX errors when creating PDF version. This typically indicates Rd problems. * checking PDF version of manual without hyperrefs or index ...Warning: running command '"C:/Progra~1/R/R-3.4.0/bin/x64/Rcmd.exe" Rd2pdf --batch --no-preview --build-dir="C:/Windows/TEMP/RtmpE9T1fB/Rd2pdff603f1c7162" --no-clean --no-index -o rnaseqGene-manual.pdf C:/DOCBUILDER_TEMP/jenkins-rnaseqGene-label=winbuilder1-81/rnaseqGene.Rcheck/rnaseqGene' had status 1 ERROR Re-running with no redirection of stdout/stderr. Hmm ... looks like a package Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : pdflatex is not available Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : pdflatex is not available Error in running tools::texi2pdf() The full report: http://docbuilder.bioconductor.org:8080/job/rnaseqGene/label=winbuilder1/lastBuild/console thanks, Mike
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