Hello, I?m having some troubles updating my package(BindingSiteFinder) on the devel branch. I?ve made some changes to the code and as always incremented the z part of the version number. Then I realized that the y part of the version number was already changed by the Bioconductor team (to 1.3.0). I guess in preparation for the new release. So, I left the version number like this, to not mess things up. Now my package does compile without errors or warnings, but my changes do not show on the devel landing page. Also, I still want to push some more changes prior to the upcoming release. My question is how do I properly set the version numbers here? Do I keep it with the y part set to the new release and then increment the z part (so 1.3.0 to 1.3.1?), or do I go back to the lates version number? Since I did not push any changes in the last cycle it would then be 1.2.1. And if I do will the package still build in the new release? Maybe someone knows what to do here? Thanks a lot in advance Mirko
[Bioc-devel] Version number trouble
3 messages · Vincent Carey, Brüggemann, Mirko
2 days later
Hi Mirko -- the devel branch has an odd y in x.y.z stvjc at stvjc-XPS-13-9300:~/BIOC_SOURCES$ cd BindingSiteFinder stvjc at stvjc-XPS-13-9300:~/BIOC_SOURCES/BindingSiteFinder$ grep Version DE* Version: 1.3.0 stvjc at stvjc-XPS-13-9300:~/BIOC_SOURCES/BindingSiteFinder$ git fetch --all Fetching origin The current release branch has an even y in x.y.z stvjc at stvjc-XPS-13-9300:~/BIOC_SOURCES/BindingSiteFinder$ git checkout RELEASE_3_15 Branch 'RELEASE_3_15' set up to track remote branch 'RELEASE_3_15' from 'origin'. Switched to a new branch 'RELEASE_3_15' stvjc at stvjc-XPS-13-9300:~/BIOC_SOURCES/BindingSiteFinder$ grep Version DE* Version: 1.2.0 stvjc at stvjc-XPS-13-9300:~/BIOC_SOURCES/BindingSiteFinder$ git remote -v origin git at git.bioconductor.org:packages/BindingSiteFinder (fetch) origin git at git.bioconductor.org:packages/BindingSiteFinder (push) By managing the current checkout you can make changes in a selected branch, incrementing z in x.y.z in the associated DESCRIPTION file as necessary Full details at https://contributions.bioconductor.org/git-version-control.html On Mon, Oct 10, 2022 at 12:19 PM Br?ggemann, Mirko <
mirko.brueggemann at bmls.de> wrote:
Hello,
I?m having some troubles updating my package(BindingSiteFinder) on the
devel branch.
I?ve made some changes to the code and as always incremented the z part of
the version number. Then I realized that the y part of the version number
was already changed by the Bioconductor team (to 1.3.0). I guess in
preparation for the new release. So, I left the version number like this,
to not mess things up.
Now my package does compile without errors or warnings, but my changes do
not show on the devel landing page. Also, I still want to push some more
changes prior to the upcoming release.
My question is how do I properly set the version numbers here? Do I keep
it with the y part set to the new release and then increment the z part (so
1.3.0 to 1.3.1?), or do I go back to the lates version number? Since I did
not push any changes in the last cycle it would then be 1.2.1. And if I do
will the package still build in the new release?
Maybe someone knows what to do here?
Thanks a lot in advance
Mirko
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Hi Vincent, thanks for the clarification. I can now see where I went wrong. I?ve dumped the version number from 1.3.0 to 1.3.1 now. Thanks a lot Mirko Von: Vincent Carey <stvjc at channing.harvard.edu> Datum: Montag, 10. Oktober 2022 um 18:26 An: "Br?ggemann, Mirko" <mirko.brueggemann at bmls.de> Cc: "bioc-devel at r-project.org" <bioc-devel at r-project.org> Betreff: Re: [Bioc-devel] Version number trouble Hi Mirko -- the devel branch has an odd y in x.y.z stvjc at stvjc-XPS-13-9300:~/BIOC_SOURCES$ cd BindingSiteFinder stvjc at stvjc-XPS-13-9300:~/BIOC_SOURCES/BindingSiteFinder$ grep Version DE* Version: 1.3.0 stvjc at stvjc-XPS-13-9300:~/BIOC_SOURCES/BindingSiteFinder$ git fetch --all Fetching origin The current release branch has an even y in x.y.z stvjc at stvjc-XPS-13-9300:~/BIOC_SOURCES/BindingSiteFinder$ git checkout RELEASE_3_15 Branch 'RELEASE_3_15' set up to track remote branch 'RELEASE_3_15' from 'origin'. Switched to a new branch 'RELEASE_3_15' stvjc at stvjc-XPS-13-9300:~/BIOC_SOURCES/BindingSiteFinder$ grep Version DE* Version: 1.2.0 stvjc at stvjc-XPS-13-9300:~/BIOC_SOURCES/BindingSiteFinder$ git remote -v origin git at git.bioconductor.org:packages/BindingSiteFinder (fetch) origin git at git.bioconductor.org:packages/BindingSiteFinder (push) By managing the current checkout you can make changes in a selected branch, incrementing z in x.y.z in the associated DESCRIPTION file as necessary Full details at https://contributions.bioconductor.org/git-version-control.html
On Mon, Oct 10, 2022 at 12:19 PM Br?ggemann, Mirko <mirko.brueggemann at bmls.de<mailto:mirko.brueggemann at bmls.de>> wrote:
Hello, I?m having some troubles updating my package(BindingSiteFinder) on the devel branch. I?ve made some changes to the code and as always incremented the z part of the version number. Then I realized that the y part of the version number was already changed by the Bioconductor team (to 1.3.0). I guess in preparation for the new release. So, I left the version number like this, to not mess things up. Now my package does compile without errors or warnings, but my changes do not show on the devel landing page. Also, I still want to push some more changes prior to the upcoming release. My question is how do I properly set the version numbers here? Do I keep it with the y part set to the new release and then increment the z part (so 1.3.0 to 1.3.1?), or do I go back to the lates version number? Since I did not push any changes in the last cycle it would then be 1.2.1. And if I do will the package still build in the new release? Maybe someone knows what to do here? Thanks a lot in advance Mirko _______________________________________________ Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.