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[Bioc-devel] BioC 2.11 branch created

5 messages · Dan Tenenbaum, Nicolas Delhomme, Kasper Daniel Hansen

Original
Dan Tenenbaum
# 
The BioC 2.11 branch is now ready.

Remember, you always have access to 2 versions of your package:
the "release" and the "devel" versions.

Right now the "release" version of your package (which is not
officially released yet but will be in the next 72 hours if
everything goes well) is in the 2.11 branch and accessible at:


https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/<PKGNAME>

Only bug fixes and documentation improvements should go here.

As always the "devel" version of your package is at:

 https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/<PKGNAME>

Normal development of your package can now resume here.

Please let us know if you have any questions.

Thanks!

Dan
Nicolas Delhomme
# 
Hi Dan,

First of all, thanks again for all the effort to make that release happen!

Then, am I correct that for the new Bioc development version, we now need to switch to R-devel (R2.16)?

Cheers,

Nico

---------------------------------------------------------------
Nicolas Delhomme

Genome Biology Computational Support

European Molecular Biology Laboratory

Tel: +49 6221 387 8310
Email: nicolas.delhomme at embl.de
Meyerhofstrasse 1 - Postfach 10.2209
69102 Heidelberg, Germany
---------------------------------------------------------------
On 2 Oct 2012, at 02:24, Dan Tenenbaum wrote:

            

      
      
      
    

        

      
      
    

  
  


  


      

    

    

      
      

        


  

        

      Dan Tenenbaum
    

    

      
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On Tue, Oct 2, 2012 at 1:00 AM, Nicolas Delhomme <delhomme at embl.de> wrote:

            

      
      
      
    

        
Yes, BioC 2.12 (which will be the new devel version after today's
release) will work with R-devel (R-2.16).
Dan

            

      
      
      
    

        

      
      
    

            

      
      
      
    

  
  


  


      

    

    

      
      

        


  

        

      Kasper Daniel Hansen
    

    

      
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So what exactly are the recommendations for useDevel and R version.

Right now I have a separate installation of R-2.15 using
useDevel(TRUE).  What will happen after Bioc 2.11 has been pushed to a
proper release?  How, if I am running R-2.15, do I choose between Bioc
2.10 and 2.11?

And if I run R-devel (2.16), will I automatically get the devel branch
no matter whether or not I use useDevel(TRUE)?

Kasper

        
On Tue, Oct 2, 2012 at 9:42 AM, Dan Tenenbaum <dtenenba at fhcrc.org> wrote:

            

      
      
      
    

        

      
      
    

            

      
      
      
    

        

      
      
    

  
  


  


      

    

    

      
      

        


  

        

      Dan Tenenbaum
    

    

      
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On Tue, Oct 2, 2012 at 6:34 PM, Kasper Daniel Hansen

        
<kasperdanielhansen at gmail.com> wrote:

            

      
      
      
    

        
We were going to discuss this in our release announcement (still
forthcoming, as is the release), but since you ask:

            

      
      
      
    

        
You'll be able to use this command (not enabled yet):
source("http://bioconductor.org/biocLite.R")
biocLite("BiocUpgrade")

            

      
      
      
    

        
Yes.

Dan