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[Bioc-devel] broken website ?
5 messages · James Bullard, Vincent Carey, Hervé Pagès
you are right, there is a problem when you go through task views. bioconductor.org/packages/2.1/Microarray.html, which is accessed through the task views links under download, shows no packages in view. seems like a logic problem with the use of the views ontology. the problem is very severe -- hardly any packages can be seen through the web pages. --- Vince Carey, PhD Assoc. Prof Med (Biostatistics) Harvard Medical School Channing Laboratory - ph 6175252265 fa 6177311541 181 Longwood Ave Boston MA 02115 USA stvjc at channing.harvard.edu
On Sun, 25 Nov 2007, James Bullard wrote:
Hi All, I am trying to figure out what is going on with the website (BiocViews), particularly I cannot really see any of the packages, which I know to be there. Is this a known problem? thanks, jim http://bioconductor.org/packages/release/BiocViews.html [[alternative HTML version deleted]]
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Hi James, Vince, A recent change in the base::write.dcf() function broke the script we use to generate those views. This is fixed now. Thanks for reporting the problem. Cheers, H.
Vincent Carey 525-2265 wrote:
you are right, there is a problem when you go through task views. bioconductor.org/packages/2.1/Microarray.html, which is accessed through the task views links under download, shows no packages in view. seems like a logic problem with the use of the views ontology. the problem is very severe -- hardly any packages can be seen through the web pages. --- Vince Carey, PhD Assoc. Prof Med (Biostatistics) Harvard Medical School Channing Laboratory - ph 6175252265 fa 6177311541 181 Longwood Ave Boston MA 02115 USA stvjc at channing.harvard.edu On Sun, 25 Nov 2007, James Bullard wrote:
Hi All, I am trying to figure out what is going on with the website (BiocViews), particularly I cannot really see any of the packages, which I know to be there. Is this a known problem? thanks, jim http://bioconductor.org/packages/release/BiocViews.html [[alternative HTML version deleted]]
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the experimental data are visible through, e.g. packages/2.1/data/experiment Leukemia.html does seem to exist but i know of no experiment package with that name -- not in a current checkout of the svn archive bioc-data/trunk/experiment/pkgs, in any case. --- Vince Carey, PhD Assoc. Prof Med (Biostatistics) Harvard Medical School Channing Laboratory - ph 6175252265 fa 6177311541 181 Longwood Ave Boston MA 02115 USA stvjc at channing.harvard.edu
On Mon, 26 Nov 2007, James Bullard wrote:
Okay, it looks good when it comes to software packages, but I am a little confused about where all of the experimental data packages are i.e. http://bioconductor.org/packages/release/Leukemia.html I must be missing something here, but I thought I would find more experimental data; maybe it is a matter of generating new pages in this section? thanks again, jim On Nov 26, 2007, at 3:38 PM, Herve Pages wrote:
Hi James, Vince, A recent change in the base::write.dcf() function broke the script we use to generate those views. This is fixed now. Thanks for reporting the problem. Cheers, H. Vincent Carey 525-2265 wrote:
you are right, there is a problem when you go through task views. bioconductor.org/packages/2.1/Microarray.html, which is accessed through the task views links under download, shows no packages in view. seems like a logic problem with the use of the views ontology. the problem is very severe -- hardly any packages can be seen through the web pages. --- Vince Carey, PhD Assoc. Prof Med (Biostatistics) Harvard Medical School Channing Laboratory - ph 6175252265 fa 6177311541 181 Longwood Ave Boston MA 02115 USA stvjc at channing.harvard.edu On Sun, 25 Nov 2007, James Bullard wrote:
Hi All, I am trying to figure out what is going on with the website (BiocViews), particularly I cannot really see any of the packages, which I know to be there. Is this a known problem? thanks, jim http://bioconductor.org/packages/release/BiocViews.html [[alternative HTML version deleted]]
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