[Bioc-devel] affyQA/QC

Hi,
  I am trying to put together a set of, what one might regard, as  
standard plots and summary statistics that should be collected on  
any set of Affymetrix microarrays (at least ones for gene  
expression). The first pass is attached, I would appreciate any  
comments on it, especially with regard to things that I have  
missed, or things I have suggested that don't seem to be quite  
correct, or could be improved.

 On an implementation note - I will be making use of existing  
software and intend to work with Craig Parman to put this into the  
existing affyQCReport package - users of that might want to let me  
know what functionality they are relying on, but this should be  
strict additions.


 thanks
   Robert

-- 
Robert Gentleman, PhD
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M2-B876
PO Box 19024
Seattle, Washington 98109-1024
206-667-7700
rgentlem at fhcrc.org

The attachment is lost, at least on my side.

Hi,
  I am trying to put together a set of, what one might regard, as 
standard plots and summary statistics that should be collected on any 
set of Affymetrix microarrays (at least ones for gene expression). The 
first pass is attached, I would appreciate any comments on it, 
especially with regard to things that I have missed, or things I have 
suggested that don't seem to be quite correct, or could be improved.

 On an implementation note - I will be making use of existing software 
and intend to work with Craig Parman to put this into the existing 
affyQCReport package - users of that might want to let me know what 
functionality they are relying on, but this should be strict additions.

 thanks
   Robert


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