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[Bioc-devel] FW: GRridge problems reported in the Multiple platform build/check report for BioC 3.17

2 messages · Wiel, M.A. van de (Mark), Shepherd, Lori

Original
Wiel, M.A. van de (Mark)
# 
Dear BioC developers,

I want to update my package on Bioconductor, as it renders an error on your compoilers. I have repeatedly tried to clone the package from BioC repository (using git at git.bioconductor.org:packages/GRridge<mailto:git at git.bioconductor.org:packages/GRridge>) but fail to get access.

I have updated the SSH key on my github account, and checked whether it is linked to my BioC account. It is. I really have no clue what I should do next. Some help would be appreciated.

Cheers, Mark van de Wiel


Van: BBS-noreply at bioconductor.org<mailto:BBS-noreply at bioconductor.org>
Verzonden: maandag 13 februari 2023 18:00
Aan: Wiel, M.A. van de (Mark)<mailto:mark.vdwiel at amsterdamumc.nl>
Onderwerp: GRridge problems reported in the Multiple platform build/check report for BioC 3.17

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Hi GRridge maintainer,

According to the Multiple platform build/check report for BioC 3.17,
the GRridge package has the following problem(s):

  o ERROR for 'R CMD check' on nebbiolo1. See the details here:
      https://eur04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmaster.bioconductor.org%2FcheckResults%2F3.17%2Fbioc-LATEST%2FGRridge%2Fnebbiolo1-checksrc.html&data=05%7C01%7Cmark.vdwiel%40amsterdamumc.nl%7Cd05eb9c9f14c471b258f08db0de3d00b%7C68dfab1a11bb4cc6beb528d756984fb6%7C0%7C0%7C638119044501133507%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=59mjw1HY%2FqKnBDO6mmyP3ZeuwWYJCagayA%2F9k6ZZQI0%3D&reserved=0

Please take the time to address this by committing and pushing
changes to your package at git.bioconductor.org

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2 days later
Shepherd, Lori
# 
I can confirm that everything is set correctly for access as well.  I would suggest checking the FAQ's for git
http://contributions.bioconductor.org/git-version-control.html#faq  particularly numbers  1, 13, 14, and 15.

Cheers,




Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263