Hey all, I have been updating my pathprint and pathprintGeoData packages (in 3.7) and I encountered the following error in one of them (only on windows server): Error: cannot allocate vector of size 237.3 Mb Here is the report: https://bioconductor.org/checkResults/3.7/bioc-LATEST/ pathprint/tokay2-checksrc.html How can I fix this? Thanks in advance. Cheers, Sokratis On 21 February 2018 at 20:37, Obenchain, Valerie <
Valerie.Obenchain at roswellpark.org> wrote:
Hi Sokratis, Unfortunately you can't rename a package ... and there is no such thing as a 'sub package'. Maybe you meant sub-package terms of dependencies. If you have new data to add that's independent of what's in pathprintGEOData you can create a new data package. I'm not sure what you mean by 'considerably more data'. The pathprintGEOData package is currently 22MG: ~ >du -h pathprintGEOData_1.4.0.tar.gz 22M pathprintGEOData_1.4.0.tar.gz We don't support git LFS yet in the experimental data repo. If you plan on making the package(s) very large we should consider making a ExperimentHub package where the data can be stored in S3. Valerie On 02/21/2018 05:16 AM, Sokratis Kariotis wrote: Hey all, I am updating 2 of my packages (pathprint & pathprintGEOData) with considerably more data and a few code updates. I also want to change the name of the data package to reflect the new content. Can the package name be changed or do I have to create new sub-packages? Thanks in advance. Cheers This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
Sokratis Kariotis Scientific Programmer Hidelab Sheffield Institute for Translational Neuroscience 385a Glossop Rd, Sheffield, S10 2HQ [[alternative HTML version deleted]]