Hi, this is just to briefly inform you that a new package called MMDiff is now available. It's a statistical testing method specifically designed to compare ChIP-Seq data sets. It takes advantage of higher order features to detect shape changes in ChIP-Seq peaks and should also be applicable to other -Seq methods, like DNase-Seq. Biological replicates are used to estimate biological variance. Any comments highly appreciated. Many thanks, Gabriele Schweikert ------- Dr Gabriele Schweikert Marie Curie Postdoctoral Research Fellow School of Informatics, Wellcome Trust Centre for Cell Biology University of Edinburgh, Edinburgh EH8 9AB, UK
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