Hi I had the following error while checking the package https://github.com/xyang2uchicago/BioTIP
base::assign(".ptime", proc.time(), pos = "CheckExEnv")
### Name: getCluster_methods
### Title: Clustering Network Nodes
### Aliases: getCluster_methods
### ** Examples
test = list('state1' = matrix(sample(1:10,6),3,3),'state2' =
+ matrix(sample(1:10,6),3,3),'state3' = matrix(sample(1:10,6),3,3))
#assign colnames and rownames to the matrix
for(i in names(test)){
+ colnames(test[[i]]) = 1:3 + row.names(test[[i]]) = 1:3}
#using 'rw' or 'natural' method igraphL <- getNetwork(test, fdr=1)
[1] "state1:3 nodes" [1] "state2:3 nodes" [1] "state3:3 nodes"
#[1] "state1:3 nodes" #[1] "state2:3 nodes" #[1] "state3:3 nodes" cl <- getCluster_methods(igraphL) #using 'km', 'pam' or 'hcm' cl <- getCluster_methods(test, method = 'pam', cutoff=2)
Error in .get_entry_index(name, stop_if_missing) : Entry TSDistances not in registry. Calls: getCluster_methods ... TSDatabaseDistances -> dist -> <Anonymous> -> f -> .get_entry_index Execution halted It seems the problem is because the required library 'TSdist' not load successfully. However, import(TSdist) is written in both DESCRIPTION and NAMESPACE. Zhezhen