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[Bioc-devel] Version number error

8 messages · Shepherd, Lori, Turaga, Nitesh, Martin Morgan +1 more

Original
Christopher John
# 
Hi

I tried to update M3C as follows, and I got an error. What is wrong with
the new version number please? What should it be?

Version: 1.7.999 --> Version: 1.7.9991

Thanks,

Chris
Shepherd, Lori
# 
normally the x.y.z of a version number  we increase in whole numbers -  I would try  1.7.10


It would also be helpful if you showed the commands you tried with the actually ERROR message so we could better diagnose.  Please include this information if the problem is still occurring.




Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263
Shepherd, Lori
# 
Or perhaps just providing the git commands you tried and the ERROR that was produced with the original  1.7.9991 would be a better place to start so we can evaluate the ERROR.


 Cheers,


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263
Turaga, Nitesh
# 
I suspect this was a Bioconductor hook rejecting the "version" number? Is that correct Chris?

Please also reply with the exact error message. 

Best,

Nitesh
This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
Christopher John
# 
This is just the update in the normal way to github, see the below code.

Please note the change from '1.7.999' to '1.7.10' as requested by Lori
unfortunately gives the same error message as before. Previously I tried
version 1.7.9991 which didn't work.

Any ideas? What is the correct version number to change to?

Thanks,

Chris

### update commands

christopher at RA-MAP:~/M3C$ git checkout master
M DESCRIPTION
Already on 'master'
Your branch is up-to-date with 'origin/master'.
christopher at RA-MAP:~/M3C$ git add .
christopher at RA-MAP:~/M3C$ git commit -m "v no change"
[master 600273a] v no change
 1 file changed, 1 insertion(+), 1 deletion(-)
christopher at RA-MAP:~/M3C$ git push origin master
Username for 'https://github.com': crj32
Password for 'https://crj32 at github.com':
Counting objects: 3, done.
Delta compression using up to 16 threads.
Compressing objects: 100% (3/3), done.
Writing objects: 100% (3/3), 290 bytes | 290.00 KiB/s, done.
Total 3 (delta 2), reused 0 (delta 0)
remote: Resolving deltas: 100% (2/2), completed with 2 local objects.
To https://github.com/crj32/M3C
   942ea47..600273a  master -> master
christopher at RA-MAP:~/M3C$ git push upstream master
Counting objects: 8, done.
Delta compression using up to 16 threads.
Compressing objects: 100% (8/8), done.
Writing objects: 100% (8/8), 1.24 KiB | 1.24 MiB/s, done.
Total 8 (delta 6), reused 0 (delta 0)

### error

remote: Error: Illegal version bump from '1.7.999' to '1.7.10'. Check
remote: http://bioconductor.org/developers/how-to/version-numbering/
remote: for details
To git.bioconductor.org:packages/M3C.git
 ! [remote rejected] master -> master (pre-receive hook declined)
error: failed to push some refs to 'git at git.bioconductor.org:
packages/M3C.git'

On Wed, 4 Sep 2019 at 14:57, Turaga, Nitesh <Nitesh.Turaga at roswellpark.org>
wrote:

  
  


  


      

    

    

      
      

        


  

        

      Martin Morgan
    

    

      
      #
    

  


  

      
This seems like a bug in the version check code.

The next number after '999' is '1000', but '9991' is larger than '999', too, so I think both 1000 and 9991 are valid version bumps; '10' is less than '999' so is not a valid version bump.

Note that .99... has no special significance in the third position (your package will be bumped to 1.8.0 in release / 1.9.0 in devel at the next release regardless...) so one would usually only get to '999' if one were a very 'commit'ed person... ;)

Martin

?On 9/5/19, 2:02 AM, "Bioc-devel on behalf of Christopher John" <bioc-devel-bounces at r-project.org on behalf of chris.r.john86 at gmail.com> wrote:

    This is just the update in the normal way to github, see the below code.
    
    Please note the change from '1.7.999' to '1.7.10' as requested by Lori
    unfortunately gives the same error message as before. Previously I tried
    version 1.7.9991 which didn't work.
    
    Any ideas? What is the correct version number to change to?
    
    Thanks,
    
    Chris
    
    ### update commands
    
    christopher at RA-MAP:~/M3C$ git checkout master
    M DESCRIPTION
    Already on 'master'
    Your branch is up-to-date with 'origin/master'.
    christopher at RA-MAP:~/M3C$ git add .
    christopher at RA-MAP:~/M3C$ git commit -m "v no change"
    [master 600273a] v no change
     1 file changed, 1 insertion(+), 1 deletion(-)
    christopher at RA-MAP:~/M3C$ git push origin master
    Username for 'https://github.com': crj32
    Password for 'https://crj32 at github.com':
    Counting objects: 3, done.
    Delta compression using up to 16 threads.
    Compressing objects: 100% (3/3), done.
    Writing objects: 100% (3/3), 290 bytes | 290.00 KiB/s, done.
    Total 3 (delta 2), reused 0 (delta 0)
    remote: Resolving deltas: 100% (2/2), completed with 2 local objects.
    To https://github.com/crj32/M3C
       942ea47..600273a  master -> master
    christopher at RA-MAP:~/M3C$ git push upstream master
    Counting objects: 8, done.
    Delta compression using up to 16 threads.
    Compressing objects: 100% (8/8), done.
    Writing objects: 100% (8/8), 1.24 KiB | 1.24 MiB/s, done.
    Total 8 (delta 6), reused 0 (delta 0)
    
    ### error
    
    remote: Error: Illegal version bump from '1.7.999' to '1.7.10'. Check
    remote: http://bioconductor.org/developers/how-to/version-numbering/
    remote: for details
    To git.bioconductor.org:packages/M3C.git
     ! [remote rejected] master -> master (pre-receive hook declined)
    error: failed to push some refs to 'git at git.bioconductor.org:
    packages/M3C.git'
    
    On Wed, 4 Sep 2019 at 14:57, Turaga, Nitesh <Nitesh.Turaga at roswellpark.org>
    wrote:
    
    > I suspect this was a Bioconductor hook rejecting the "version" number? Is
    > that correct Chris?
    >
    > Please also reply with the exact error message.
    >
    > Best,
    >
    > Nitesh
    >
    > > On Sep 4, 2019, at 7:58 AM, Shepherd, Lori <Lori.Shepherd at RoswellPark.org>

        
> wrote:

        
> >
    > > Or perhaps just providing the git commands you tried and the ERROR that
    > was produced with the original  1.7.9991 would be a better place to start
    > so we can evaluate the ERROR.
    > >
    > >
    > > Cheers,
    > >
    > >
    > > Lori Shepherd
    > >
    > > Bioconductor Core Team
    > >
    > > Roswell Park Cancer Institute
    > >
    > > Department of Biostatistics & Bioinformatics
    > >
    > > Elm & Carlton Streets
    > >
    > > Buffalo, New York 14263
    > >
    > > ________________________________
    > > From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of
    > Christopher John <chris.r.john86 at gmail.com>
    > > Sent: Wednesday, September 4, 2019 5:48:54 AM
    > > To: bioc-devel at r-project.org <bioc-devel at r-project.org>
    > > Subject: [Bioc-devel] Version number error
    > >
    > > Hi
    > >
    > > I tried to update M3C as follows, and I got an error. What is wrong with
    > > the new version number please? What should it be?
    > >
    > > Version: 1.7.999 --> Version: 1.7.9991
    > >
    > > Thanks,
    > >
    > > Chris
    > >
    > >        [[alternative HTML version deleted]]
    > >
    > > _______________________________________________
    > > Bioc-devel at r-project.org mailing list
    > > https://stat.ethz.ch/mailman/listinfo/bioc-devel
    > >
    > >
    > > This email message may contain legally privileged and/or confidential
    > information.  If you are not the intended recipient(s), or the employee or
    > agent responsible for the delivery of this message to the intended
    > recipient(s), you are hereby notified that any disclosure, copying,
    > distribution, or use of this email message is prohibited.  If you have
    > received this message in error, please notify the sender immediately by
    > e-mail and delete this email message from your computer. Thank you.
    > >       [[alternative HTML version deleted]]
    > >
    > > _______________________________________________
    > > Bioc-devel at r-project.org mailing list
    > > https://stat.ethz.ch/mailman/listinfo/bioc-devel
    >
    >
    >
    > This email message may contain legally privileged and/or confidential
    > information.  If you are not the intended recipient(s), or the employee or
    > agent responsible for the delivery of this message to the intended
    > recipient(s), you are hereby notified that any disclosure, copying,
    > distribution, or use of this email message is prohibited.  If you have
    > received this message in error, please notify the sender immediately by
    > e-mail and delete this email message from your computer. Thank you.
    >
    
    
    _______________________________________________
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    https://stat.ethz.ch/mailman/listinfo/bioc-devel

  
  


  


      

    

    

      
      

        


  

        

      Christopher John
    

    

      
      #
    

  


  

      
Still stuck here trying to update. I think I may have been a bit special
with my version numbering.

Well let me know if there is a solution or do I just wait until the next
release..(?)

remote: Error: Illegal version bump from '1.7.999' to '1.7.1000'. Check
remote: http://bioconductor.org/developers/how-to/version-numbering/
remote: for details
To git.bioconductor.org:packages/M3C.git
 ! [remote rejected] master -> master (pre-receive hook declined)
error: failed to push some refs to 'git at git.bioconductor.org:
packages/M3C.git'

Chris

        
On Thu, 5 Sep 2019 at 11:17, Martin Morgan <mtmorgan.bioc at gmail.com> wrote:

        

            

      
      
      
    

        

      
      
    

        

  
  


  


      

    

    

      
      

        


  

        

      Martin Morgan
    

    

      
      #
    

  


  

      
this needs to be fixed on our end, so please just be patient (I would expect a fix later today...) Martin

        
?On 9/5/19, 6:48 AM, "Christopher John" <chris.r.john86 at gmail.com> wrote:

        
Still stuck here trying to update. I think I may have been a bit special with my version numbering.
    
    
    Well let me know if there is a solution or do I just wait until the next release..(?)
    
    
    
    remote: Error: Illegal version bump from '1.7.999' to '1.7.1000'. Check 
    remote: http://bioconductor.org/developers/how-to/version-numbering/
    remote: for details
    To git.bioconductor.org:packages/M3C.git
     ! [remote rejected] master -> master (pre-receive hook declined)
    error: failed to push some refs to 'git at git.bioconductor.org:packages/M3C.git'
    
    
    Chris

        
On Thu, 5 Sep 2019 at 11:17, Martin Morgan <mtmorgan.bioc at gmail.com> wrote:

        
This seems like a bug in the version check code.
    
    The next number after '999' is '1000', but '9991' is larger than '999', too, so I think both 1000 and 9991 are valid version bumps; '10' is less than '999' so is not a valid version bump.
    
    Note that .99... has no special significance in the third position (your package will be bumped to 1.8.0 in release / 1.9.0 in devel at the next release regardless...) so one would usually only get to '999' if one were a very 'commit'ed person... ;)
    
    Martin
    
    ?On 9/5/19, 2:02 AM, "Bioc-devel on behalf of Christopher John" <bioc-devel-bounces at r-project.org on behalf of

        
chris.r.john86 at gmail.com> wrote:

        
This is just the update in the normal way to github, see the below code.
    
        Please note the change from '1.7.999' to '1.7.10' as requested by Lori
        unfortunately gives the same error message as before. Previously I tried
        version 1.7.9991 which didn't work.
    
        Any ideas? What is the correct version number to change to?
    
        Thanks,
    
        Chris
    
        ### update commands
    
        christopher at RA-MAP:~/M3C$ git checkout master
        M DESCRIPTION
        Already on 'master'
        Your branch is up-to-date with 'origin/master'.
        christopher at RA-MAP:~/M3C$ git add .
        christopher at RA-MAP:~/M3C$ git commit -m "v no change"
        [master 600273a] v no change
         1 file changed, 1 insertion(+), 1 deletion(-)
        christopher at RA-MAP:~/M3C$ git push origin master
        Username for 'https://github.com': crj32
        Password for 'https://crj32 at github.com':
        Counting objects: 3, done.
        Delta compression using up to 16 threads.
        Compressing objects: 100% (3/3), done.
        Writing objects: 100% (3/3), 290 bytes | 290.00 KiB/s, done.
        Total 3 (delta 2), reused 0 (delta 0)
        remote: Resolving deltas: 100% (2/2), completed with 2 local objects.
        To https://github.com/crj32/M3C
           942ea47..600273a  master -> master
        christopher at RA-MAP:~/M3C$ git push upstream master
        Counting objects: 8, done.
        Delta compression using up to 16 threads.
        Compressing objects: 100% (8/8), done.
        Writing objects: 100% (8/8), 1.24 KiB | 1.24 MiB/s, done.
        Total 8 (delta 6), reused 0 (delta 0)
    
        ### error
    
        remote: Error: Illegal version bump from '1.7.999' to '1.7.10'. Check
        remote: 
    http://bioconductor.org/developers/how-to/version-numbering/ <http://bioconductor.org/developers/how-to/version-numbering/>
        remote: for details
        To git.bioconductor.org:packages/M3C.git
         ! [remote rejected] master -> master (pre-receive hook declined)
        error: failed to push some refs to 'git at git.bioconductor.org:
        packages/M3C.git'
    
        On Wed, 4 Sep 2019 at 14:57, Turaga, Nitesh <Nitesh.Turaga at roswellpark.org>
        wrote:
    
        > I suspect this was a Bioconductor hook rejecting the "version" number? Is
        > that correct Chris?
        >
        > Please also reply with the exact error message.
        >
        > Best,
        >
        > Nitesh
        >
        > > On Sep 4, 2019, at 7:58 AM, Shepherd, Lori <Lori.Shepherd at RoswellPark.org>

        
> wrote:

        
> >
        > > Or perhaps just providing the git commands you tried and the ERROR that
        > was produced with the original  1.7.9991 would be a better place to start
        > so we can evaluate the ERROR.
        > >
        > >
        > > Cheers,
        > >
        > >
        > > Lori Shepherd
        > >
        > > Bioconductor Core Team
        > >
        > > Roswell Park Cancer Institute
        > >
        > > Department of Biostatistics & Bioinformatics
        > >
        > > Elm & Carlton Streets
        > >
        > > Buffalo, New York 14263
        > >
        > > ________________________________
        > > From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of
        > Christopher John <chris.r.john86 at gmail.com>
        > > Sent: Wednesday, September 4, 2019 5:48:54 AM
        > > To: bioc-devel at r-project.org <bioc-devel at r-project.org>
        > > Subject: [Bioc-devel] Version number error
        > >
        > > Hi
        > >
        > > I tried to update M3C as follows, and I got an error. What is wrong with
        > > the new version number please? What should it be?
        > >
        > > Version: 1.7.999 --> Version: 1.7.9991
        > >
        > > Thanks,
        > >
        > > Chris
        > >
        > >        [[alternative HTML version deleted]]
        > >
        > > _______________________________________________
        > > Bioc-devel at r-project.org mailing list
        > > 
    https://stat.ethz.ch/mailman/listinfo/bioc-devel <https://stat.ethz.ch/mailman/listinfo/bioc-devel>
        > >
        > >
        > > This email message may contain legally privileged and/or confidential
        > information.  If you are not the intended recipient(s), or the employee or
        > agent responsible for the delivery of this message to the intended
        > recipient(s), you are hereby notified that any disclosure, copying,
        > distribution, or use of this email message is prohibited.  If you have
        > received this message in error, please notify the sender immediately by
        > e-mail and delete this email message from your computer. Thank you.
        > >       [[alternative HTML version deleted]]
        > >
        > > _______________________________________________
        > > Bioc-devel at r-project.org mailing list
        > > 
    https://stat.ethz.ch/mailman/listinfo/bioc-devel <https://stat.ethz.ch/mailman/listinfo/bioc-devel>
        >
        >
        >
        > This email message may contain legally privileged and/or confidential
        > information.  If you are not the intended recipient(s), or the employee or
        > agent responsible for the delivery of this message to the intended
        > recipient(s), you are hereby notified that any disclosure, copying,
        > distribution, or use of this email message is prohibited.  If you have
        > received this message in error, please notify the sender immediately by
        > e-mail and delete this email message from your computer. Thank you.
        >
    
    
        _______________________________________________
        Bioc-devel at r-project.org mailing list
        
    https://stat.ethz.ch/mailman/listinfo/bioc-devel <https://stat.ethz.ch/mailman/listinfo/bioc-devel>