[Bioc-devel] riesling1: some package that install, build, check, and build bin OK, shown in red - Bioc-devel

Wed, Jul 7, 2021 4:18 AM #

Dear All,

In BioC 3.14, with riesling1, some packages that are shown as OK in
Install, Build, Check, and Build bin, show, however a red dot, and have no
zip. Some examples are (the first one I maintain; the rest I just picked randomly):


https://bioconductor.org/checkResults/devel/bioc-LATEST/OncoSimulR/

https://bioconductor.org/checkResults/devel/bioc-LATEST/AgiMicroRna/

https://bioconductor.org/checkResults/devel/bioc-LATEST/ggcyto/

https://bioconductor.org/checkResults/devel/bioc-LATEST/heatmaps/

https://bioconductor.org/checkResults/devel/bioc-LATEST/yarn/


This has been the case for at least a few days (weeks?). I can see no
obvious pattern, nor what could maintainers do to fix this.


Best,


R.

Ramon Diaz-Uriarte
Department of Biochemistry, Lab B-25
Facultad de Medicina
Universidad Aut?noma de Madrid 
Arzobispo Morcillo, 4
28029 Madrid
Spain

Phone: +34-91-497-2412

Email: rdiaz02 at gmail.com
       ramon.diaz at iib.uam.es

https://ligarto.org/rdiaz

Shepherd, Lori

Wed, Jul 7, 2021 5:14 AM #

Normally the red dot prevents propagation due to conditions that would not allow the package to function properly such as dependencies not being available, or a requested version of a package is not yet available.




Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

Martin Morgan

Wed, Jul 7, 2021 7:06 AM #

Mousing over the red dot provides an explanation, e.g., for OncoSimulR "NO, package depends on 'Rgraphviz' which is not available." Rgraphviz is indeed failing on all three platforms, but from the landing page it has propagated some time this release for Linux and macOS and so OncoSimulR can also propagate for these platforms.

Martin

?On 7/7/21, 8:15 AM, "Bioc-devel on behalf of Kern, Lori" <bioc-devel-bounces at r-project.org on behalf of Lori.Shepherd at RoswellPark.org> wrote:

    Normally the red dot prevents propagation due to conditions that would not allow the package to function properly such as dependencies not being available, or a requested version of a package is not yet available.




    Lori Shepherd

    Bioconductor Core Team

    Roswell Park Comprehensive Cancer Center

    Department of Biostatistics & Bioinformatics

    Elm & Carlton Streets

    Buffalo, New York 14263

Ramon Diaz-Uriarte

Wed, Jul 7, 2021 7:22 AM #

Thanks Martin and Lori, and sorry for the noise: it did not occur to me to
mouse over the red dot.


Best,


R.

On Wed, 07-July-2021, at 16:06:15, Martin Morgan <mtmorgan.bioc at gmail.com> wrote:

    ________________________________
    From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Ramon Diaz-Uriarte <rdiaz02 at gmail.com>
    Sent: Wednesday, July 7, 2021 7:18 AM
    To: bioc-devel at r-project.org <bioc-devel at r-project.org>
    Cc: r.diaz at uam.es <r.diaz at uam.es>
    Subject: [Bioc-devel] riesling1: some package that install, build, check, and build bin OK, shown in red


    Dear All,

    In BioC 3.14, with riesling1, some packages that are shown as OK in
    Install, Build, Check, and Build bin, show, however a red dot, and have no
    zip. Some examples are (the first one I maintain; the rest I just picked randomly):


    https://secure-web.cisco.com/1LPZs4_m-Sjb7J2OF7hSci9uIIDVRJ8EVLBRY5CDKrIIZJcqZhLRy9txHMsJSf3DZNBBjTnO_yfRvSBnhX3IO-f09R9EaqerV4QjLjvGXOGu6oKf4paevsbGSTPv8mt-iHp2u9hxbkOyBarn1-t2ZgZF10KG11gkBQzvPhQnZaiDKZ4mnEcyBW0wQ6oR4hl11MLnN_rFOa269LUWu4C7tn6kiKGi5x4bs0z2cIW0N3s4s6nGkaoSty1Rw_8kQt1c8QyARYiLejJ_akIGtJmb-U0IMIw9JZKsideOakLD1sbW0cUR8D_VRD37mCqApuOCs/https%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2FOncoSimulR%2F

    https://secure-web.cisco.com/1TRr0mW7EHxnAYu4mZ5EPOhrFQVMMYiQUcymMf8unAW28HCPCv37EpvgSaY-Bd4kEvhtgBxJTfZONOY7Jyo7VC8Ijr2SvX_kRsJx_JPTrv9pyy_KwACIkqHp7L-Ac_4-NCcPAiGt7ImmrJIYoIQaTRl1eHmtRhql169MLnuiG1nzuOw_3-xczfDnIfQ-pC_Ai0NeZpjiHMgxuG9VGKTdi3M1ycqUx7NowAZf9AzoHKN_l5sIZA1TG4hNX217UAzQbJrT3Q1hXB80USxwvXYXvDWUoHaMp8zgmbEnHUIxbqYwO6Wfm6yaIGjlMBTffuU9H/https%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2FAgiMicroRna%2F

    https://secure-web.cisco.com/1o8SgTdbVVNhIQs7ivAccToqJB9V7H-m1eqm66Y_pd5WfYet1zq5M62Lt4ZSTpKgVvh_2jGS5BBMPfJATxys4HRK9_-Ee_IpWOiuKr1Jn9z4PBWtVN-Yl20WZI-AY1CITPqpUjZDR18kp1lZCa2lK32fCh4t2RIpcy4hFKBXhlgvV6tt08RCLN4h8SMo8BhBbY10wxyxiDzrylI7fqx93HNWO-UvbTqhuE9gnRx3DLS0ro-aZhWkLwTsAdG-GvMwhbFqqCUW6zzXY_i6kE0uAT9GD5wKNEgIjAPjLl9KWou5vQ5rq6kt7bj3e-m0NKPEC/https%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2Fggcyto%2F

    https://secure-web.cisco.com/1Ftx9oH59Y_JxkuehpZFkdhFER7ELXhXyMw0uaFIOPZwX0gHe1RWKDg2vAvmhO0tfONpdhIwpZm3TuKSXjxgho07TtSBmd4ZeOWOCKP6ROUEWTMfrhv1T6cLUIZVkhyaw2uRL3FDLC6jpvrXbkLcbjiNOlEvdxlPlz2fkODOPfgrJlqtj-aLRu3B2qz7kYI5tgsZ2VW6jC9iTBmrLmjf6IozEfT2zXpDESMZhbYxDYKzvHpNYREJsvENg5DLTeGrc1xghizQs1lb0pvmBvm24uGI0LIsM-6PHEqGyFlUnmgWtJY7Ql4_FiFO8-7YpxC8V/https%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2Fheatmaps%2F

    https://secure-web.cisco.com/1afzI3GqGX-mHX4DDarX2jd2AktznzSU20ieI1-qks8kUqPF-Yu3O0fIUwToXvz7VWZru6pRekTa-2QkCAM2CkRVAMEPrFzLR9DPblCGWSFz1LcGCMF3SOkk_3g4e7ACokDHq_zH6tdG-n2tBMTPqdXepqt-QpZ9G5a4Q_kbjlwZFPV5wcKxAPuarJqUWszExfP-Tor9VKSNxm35MEIsany-KZvlcRfb206YG_-XXO1b1PeTScWb29izYpeZVEDUAEDjVqTAQ9Bb3fPX-VM-SDscUcvUdNzvVG4VCMk_AqXOXRdGbdVGHrzT85H0xkS4I/https%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2Fyarn%2F


    This has been the case for at least a few days (weeks?). I can see no
    obvious pattern, nor what could maintainers do to fix this.


    Best,


    R.

    --
    Ramon Diaz-Uriarte
    Department of Biochemistry, Lab B-25
    Facultad de Medicina
    Universidad Aut?noma de Madrid
    Arzobispo Morcillo, 4
    28029 Madrid
    Spain

    Phone: +34-91-497-2412

    Email: rdiaz02 at gmail.com
           ramon.diaz at iib.uam.es

    https://secure-web.cisco.com/1wIPeTMOPJZXqSNBoUPN4Q1VFwXVN8Am743dcl5De28eXZhqi_DzJsfc3tB9H-n-9yHJH9oshq-it3k_9YDzoWOtthu3YQoNrIIAFrB9fxHbXMzQlc6JgaYBhIHS2qQuy011HTR2zn64IsLs0c8rkuI6w5d4H446acH1aIzYiY4Yck_YGle7L0iuD3NQhjt5eQrzXbeJdhK8tG-rbC1UMzWbf-MFONXLKzvy_5hiX7iI25DlxMq3bffT1WFBvPVMnV9MR3_J6QV8_Td-omP6uJU9f_n5_Rz1NOLK0fRHebhdnri0Hkmwsr_1NoXun5wW8/https%3A%2F%2Fligarto.org%2Frdiaz
    _______________________________________________
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Ramon Diaz-Uriarte
Department of Biochemistry, Lab B-25
Facultad de Medicina
Universidad Aut?noma de Madrid 
Arzobispo Morcillo, 4
28029 Madrid
Spain

Phone: +34-91-497-2412

Email: rdiaz02 at gmail.com
       ramon.diaz at iib.uam.es

https://ligarto.org/rdiaz