Dear core team, I would like to submit my package trackplot <https://github.com/PoisonAlien/trackplot> to Bioconductor. However, it depends on an external command line tool (bwtool) that needs to be installed and located under the path. Would this dependancy make the package eligible for Bioconductor submission? Thank you. Best. Anand
[Bioc-devel] Package submission- external dependancy
2 messages · Anand MT, Shepherd, Lori
3 days later
Could you please provide a link to the tool for evaluation? We will take a look to see if it is feasible. Also note it would be helpful to have an INSTALL file and list the system dependency in your DESCRIPTION as well. http://contributions.bioconductor.org/sysdep.html#sysdep Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of anand_mt <anand_mt at hotmail.com>
Sent: Friday, February 9, 2024 6:12 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Package submission- external dependancy
Sent: Friday, February 9, 2024 6:12 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Package submission- external dependancy
Dear core team, I would like to submit my package trackplot <https://secure-web.cisco.com/18dm0zXkQb6S4C-RRQ5UglcqQjhYE0MQRPjZGrXqjGypAwqPpbbSewpzJo68shgBUkmJlEf9ioTus4EhDGAftp5UOtoCSiccx1tO5IecWYNssJL66VTN3WYUjntsFJCuQvLc-H3ui8xmchgESc2HvKKLuPWk4Sckd0zH3UUT8ZzhDqk-vtrqIJ6dO6THJ8nRXvyF6mbdcJBVr-L4ioYnAd0aAL9cp4tYwx7i7yi6xGFm8HXCLixvWj9oHt6DedqDVWzyC0TV9vPOX7AY4jr1jwsx8IvmXnMMLRFY0zTFAYZHuiYnZ4OtGL64hO1CGUJA5/https%3A%2F%2Fgithub.com%2FPoisonAlien%2Ftrackplot> to Bioconductor. However, it depends on an external command line tool (bwtool) that needs to be installed and located under the path. Would this dependancy make the package eligible for Bioconductor submission? Thank you. Best. Anand [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://secure-web.cisco.com/1K--1Bv9fRUfBpJht9NoPWtkoPRf6VWXVfq1ljJJJWXvmpillGpLYrUzOVI-4NITQSmWqdhs8LLmaJOUMCBMOlJHgYlYd5MkswBhb9xiPQidlH7wJbVm9VTNZowNrasqfAMpWq_smxqAHgipAQz15swKwq2KeRLv7FMapTxJTO-00-tdyIaLU50i0T-ISbNrhla27Xc0YlP0t9UrVFichU7bkB7IZg-xTnI-eEHNbA6XYcyvEAB3Dmn0zOgrMH3s8F-a7Qn4fcjCZr_iWJUh1ajhTOobsCy1pczga9eY6xzhaYDXSeZRgwOeH3kR8-Bjt/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.