Hello, I am following this instruction to fix bugs: http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/ However, both master and RELEASE_3_10 branches were not updated. For master branch, I have the following messages which could be helpful: $ git commit -m "DEV 1.5.10" . [master a358dce] DEV 1.5.10 1 file changed, 5 insertions(+), 13 deletions(-) $ git push upstream master Enumerating objects: 7, done. Counting objects: 100% (7/7), done. Delta compression using up to 12 threads Compressing objects: 100% (4/4), done. Writing objects: 100% (4/4), 391 bytes | 391.00 KiB/s, done. Total 4 (delta 3), reused 0 (delta 0) To git.bioconductor.org:packages/bayNorm 7c57170..a358dce master -> master However, this update was not successful as the message "DEV 1.5.10" was not appeared in the github website. On my laptop, I am working on the folder, which was obtained via "git clone git at git.bioconductor.org:packages/bayNorm" Previously, I directly updated packages on master branch via: git add . ; git commit . ; and git push Not sure whether that procedure is a mistake or not. I appreciate for your help! Best wishes, Wenhao
[Bioc-devel] A query about fixing bugs via github
3 messages · Tang, Wenhao, Vincent Carey
Just sync the repositories solved the problem: http://bioconductor.org/developers/how-to/git/sync-existing-repositories/ Best wishes, Wenhao ________________________________ ??????: Bioc-devel <bioc-devel-bounces at r-project.org> ???? Tang, Wenhao <wenhao.tang15 at imperial.ac.uk> ???????: 2020??1??5?? 20:50 ?????: bioc-devel at r-project.org <bioc-devel at r-project.org> ????: [Bioc-devel] A query about fixing bugs via github ******************* This email from originates from outside Imperial. Do not click on links and attachments unless you recognise the sender. If you trust the sender, add them to your safe senders list https://spam.ic.ac.uk/SpamConsole/Senders.aspx to disable email stamping for this address. ******************* Hello, I am following this instruction to fix bugs: http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/ However, both master and RELEASE_3_10 branches were not updated. For master branch, I have the following messages which could be helpful: $ git commit -m "DEV 1.5.10" . [master a358dce] DEV 1.5.10 1 file changed, 5 insertions(+), 13 deletions(-) $ git push upstream master Enumerating objects: 7, done. Counting objects: 100% (7/7), done. Delta compression using up to 12 threads Compressing objects: 100% (4/4), done. Writing objects: 100% (4/4), 391 bytes | 391.00 KiB/s, done. Total 4 (delta 3), reused 0 (delta 0) To git.bioconductor.org:packages/bayNorm 7c57170..a358dce master -> master However, this update was not successful as the message "DEV 1.5.10" was not appeared in the github website. On my laptop, I am working on the folder, which was obtained via "git clone git at git.bioconductor.org:packages/bayNorm" Previously, I directly updated packages on master branch via: git add . ; git commit . ; and git push Not sure whether that procedure is a mistake or not. I appreciate for your help! Best wishes, Wenhao _______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
On Sun, Jan 5, 2020 at 7:50 AM Tang, Wenhao <wenhao.tang15 at imperial.ac.uk> wrote:
Hello, I am following this instruction to fix bugs: http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/ However, both master and RELEASE_3_10 branches were not updated. For master branch, I have the following messages which could be helpful: $ git commit -m "DEV 1.5.10" . [master a358dce] DEV 1.5.10 1 file changed, 5 insertions(+), 13 deletions(-) $ git push upstream master Enumerating objects: 7, done. Counting objects: 100% (7/7), done. Delta compression using up to 12 threads Compressing objects: 100% (4/4), done. Writing objects: 100% (4/4), 391 bytes | 391.00 KiB/s, done. Total 4 (delta 3), reused 0 (delta 0) To git.bioconductor.org:packages/bayNorm 7c57170..a358dce master -> master However, this update was not successful as the message "DEV 1.5.10" was not appeared in the github website.
Is this sorted now? The git commands shown above don't affect a github website. On the other hand at https://github.com/WT215/bayNorm, which you maintain, I see the tag on several folders. In the bioc git repository I see commit 43af6a11b166dda2a2283bc5b51139b926297751 Merge: e9528c8 a358dce Author: Wenhao Tang <wt215 at ic.ac.uk> Date: Sun Jan 5 21:16:10 2020 +0800 Merge remote-tracking branch 'upstream/master' commit a358dce3bf1b3fb7476d1b9cf4bef3622bab0ee1 Author: Wenhao Tang <wt215 at ic.ac.uk> Date: Sun Jan 5 20:34:19 2020 +0800 DEV 1.5.10 which is what you are looking for?
On my laptop, I am working on the folder, which was obtained via "git
clone git at git.bioconductor.org:packages/bayNorm"
Previously, I directly updated packages on master branch via: git add . ;
git commit . ; and git push
Not sure whether that procedure is a mistake or not.
I appreciate for your help!
Best wishes,
Wenhao
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