[Bioc-devel] Issue with an illegal version bump message when updating an old experiment data package

Hi Leonardo,

Keep in mind that GitHub and the Bioconductor git server are two
different animals.

You should be pushing your changes to the git server as you would with
software
packages ( `git at git.bioconductor.org:packages/derfinderData` ).

My guess is that the hook is looking at the version already in the git
server and
comparing that to the committed changes (but I could be wrong).

Nitesh can elaborate a bit more on this.

We will look into it on our end.

Regards,

Marcel




On 09/24/2018 10:54 AM, Leonardo Collado Torres wrote:

Hi,

Marcel Ramos told me a few months ago (July 24, 2018) that experiment
data packages are now controlled the same way as software packages via
GitHub. Today I finally tried synching the repos following these
instructions http://bioconductor.org/developers/how-to/git/sync-existing-repositories/.
I had to use the "git merge --allow-unrelated-histories
upstream/master" step and resolve 3 small conflicts. It's almost all
working well, the step I'm stuck at is:

$ git push upstream master
Counting objects: 45, done.
Delta compression using up to 4 threads.
Compressing objects: 100% (38/38), done.
Writing objects: 100% (45/45), 5.98 KiB | 1.50 MiB/s, done.
Total 45 (delta 25), reused 5 (delta 4)
remote: Error: Illegal version bump from '0.115.0' to '0.115.1'. Check
remote: http://bioconductor.org/developers/how-to/version-numbering/
remote: for details
To git.bioconductor.org:packages/derfinderData.git
 ! [remote rejected] master -> master (pre-receive hook declined)
error: failed to push some refs to
'git at git.bioconductor.org:packages/derfinderData.git'

My guess is that the hook is looking at
https://github.com/leekgroup/derfinderData/commit/90971f8c8f6b4116d939309942a781bc5f55d9d8
and thinks that I'm trying to bump from 0.103.1 to 0.115.1 while in
reality the version at
http://bioconductor.org/packages/devel/data/experiment/html/derfinderData.html
is 0.115.0 (updated in
https://github.com/leekgroup/derfinderData/commit/dbf71bbd4418be5a80a6060df8f5f16379a01cb3).

Is there something I can do to make this work?

GitHub: https://github.com/leekgroup/derfinderData
Bioc-devel: http://bioconductor.org/packages/devel/data/experiment/html/derfinderData.html

PS I guess that I don't need this file anymore:
https://github.com/leekgroup/derfinderData/blob/master/external_data_store.txt
nor the currently untracked svn files:

$ git status
On branch master
Your branch is up to date with 'origin/master'.

Untracked files:
  (use "git add <file>..." to include in what will be committed)

data/.svn/
inst/extdata/.svn/

Best,
Leo

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