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[Bioc-devel] GenomicFeatures Install Fails

3 messages · Dario Strbenac, Wei Shi, Hervé Pagès

#
Hello,

I'm having problems installing the package GenomicFeatures, development version. I've looked at http://www.bioconductor.org/checkResults/2.8/bioc-LATEST/ and it doesn't have warnings or errors there, but when I try to install it I get :

* installing *source* package ?GenomicFeatures? ...
  ...          ...
Error : class "Sequence" is not exported by 'namespace:IRanges'
ERROR: lazy loading failed for package ?GenomicFeatures?
  ...          ...

I've got the latest IRanges installed though.
...          ...
R version 2.13.0 RC (2011-04-05 r55310)
Platform: x86_64-unknown-linux-gnu (64-bit)
  ...         ...
other attached packages:
[1] IRanges_1.9.31
  ...         ...

Am I doing something wrong, or are there some more changes to be made before it goes to release ?

--------------------------------------
Dario Strbenac
Research Assistant
Cancer Epigenetics
Garvan Institute of Medical Research
Darlinghurst NSW 2010
Australia
#
I got that problem too ... 

Wei
On Apr 11, 2011, at 2:00 PM, Dario Strbenac wrote:

            
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Hi Dario, Wei,

Remember that this is devel and some packages might introduce changes
that affect other packages. So please make sure that you update
your installation frequently:

   source("http://bioconductor.org/biocLite.R")
   update.packages(repos=biocinstallRepos(), ask=FALSE, checkBuilt=TRUE)

For the particular problem you are seeing, make sure you have the
latest versions of IRanges, GenomicRanges, Biostrings, BSgenome,
and rtracklayer before you try to install GenomicFeatures.

Cheers,
H.
On 11-04-10 09:04 PM, Wei Shi wrote: