Dear colleagues, One of my students is currently working on a package that we plan to submit to Bioconductor. I want him to adhere to the Bioconductor coding standards which I thought were available at http://wiki.fhcrc.org/bioc/Coding_Standards. However, it turned out that the site is down or has been moved. I searched for them and only found https://phssec1.fhcrc.org/secureplone/www.bioconductor.org/developers/OLD/devwiki/CodingStandards which is somehow what I expect, but seems quite old (last edited 7 years ago). So where have the guidelines gone? Thanks in advance for your any kind of help! Best regards, Ulrich ------------------------------------------------------------------------ *Dr. Ulrich Bodenhofer* Associate Professor Institute of Bioinformatics *Johannes Kepler University* Altenberger Str. 69 4040 Linz, Austria Tel. +43 732 2468 4526 Fax +43 732 2468 4539 bodenhofer at bioinf.jku.at <mailto:bodenhofer at bioinf.jku.at> http://www.bioinf.jku.at/ <http://www.bioinf.jku.at>
[Bioc-devel] Bioconductor coding standards
4 messages · Laurent Gatto, Ulrich Bodenhofer, Sean Davis
On 26 March 2013 09:26, Ulrich Bodenhofer <bodenhofer at bioinf.jku.at> wrote:
Dear colleagues, One of my students is currently working on a package that we plan to submit to Bioconductor. I want him to adhere to the Bioconductor coding standards which I thought were available at http://wiki.fhcrc.org/bioc/Coding_Standards. However, it turned out that the site is down or has been moved. I searched for them and only found https://phssec1.fhcrc.org/secureplone/www.bioconductor.org/developers/OLD/devwiki/CodingStandards which is somehow what I expect, but seems quite old (last edited 7 years ago). So where have the guidelines gone? Thanks in advance for your any kind of help!
What about http://bioconductor.org/developers/package-guidelines/ Laurent
Best regards, Ulrich ------------------------------------------------------------------------ *Dr. Ulrich Bodenhofer* Associate Professor Institute of Bioinformatics *Johannes Kepler University* Altenberger Str. 69 4040 Linz, Austria Tel. +43 732 2468 4526 Fax +43 732 2468 4539 bodenhofer at bioinf.jku.at <mailto:bodenhofer at bioinf.jku.at> http://www.bioinf.jku.at/ <http://www.bioinf.jku.at>
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On 03/26/2013 12:18 PM, Laurent Gatto wrote:
On 26 March 2013 09:26, Ulrich Bodenhofer <bodenhofer at bioinf.jku.at> wrote:
Dear colleagues, One of my students is currently working on a package that we plan to submit to Bioconductor. I want him to adhere to the Bioconductor coding standards which I thought were available at http://wiki.fhcrc.org/bioc/Coding_Standards. However, it turned out that the site is down or has been moved. I searched for them and only found https://phssec1.fhcrc.org/secureplone/www.bioconductor.org/developers/OLD/devwiki/CodingStandards which is somehow what I expect, but seems quite old (last edited 7 years ago). So where have the guidelines gone? Thanks in advance for your any kind of help!
What about http://bioconductor.org/developers/package-guidelines/ Laurent
Of course, I know this page, but this is not what I was looking for. While the package guidelines pagedeals with the structure and design of packages, I was looking for guidelines how to write code, i.e. indentation, spacing, line length, etc. Regards, Ulrich
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