Dear All, The citation information of my "BUScorrect" R package is shown as an R package version (e.g., xxx, xxx, R package version 0.99.10.), but I want it to be my original paper (e.g., xxx, xxx, JournalName). I tried to manually insert the "CITATION" file in the "inst" folder, as described in https://cran.r-project.org/doc/manuals/r-release/R-exts.html#CITATION-files. It works if the package is installed locally. However, when the package is installed from the Bioconductor platform, the citation is still the R package version. I am wondering how to change the citation on Bioconductor? Many thanks for your great help! Xiangyu
[Bioc-devel] Change the citation of my Bioconductor R package "BUScorrect"
11 messages · Martin Morgan, Levi Waldron, Shepherd, Lori +1 more
1 day later
Have you pushed your changes to git at git.bioconductor.org:packages/BUScorrect and waited for a successful nightly build http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/ ?
On 09/03/2018 07:10 AM, Xiangyu Luo wrote:
Dear All, The citation information of my "BUScorrect" R package is shown as an R package version (e.g., xxx, xxx, R package version 0.99.10.), but I want it to be my original paper (e.g., xxx, xxx, JournalName). I tried to manually insert the "CITATION" file in the "inst" folder, as described in https://cran.r-project.org/doc/manuals/r-release/R-exts.html#CITATION-files. It works if the package is installed locally. However, when the package is installed from the Bioconductor platform, the citation is still the R package version. I am wondering how to change the citation on Bioconductor? Many thanks for your great help! Xiangyu [[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
And don't forget to bump your version number, and to check that the new version number is reflected at the bioc-devel landing page. You will have to do a separate commit to the release branch if you want to add the citation to release before the next release cycle (I assume this is an allowable change to the release branch): https://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/ On Tue, Sep 4, 2018 at 9:05 AM Martin Morgan <mtmorgan.bioc at gmail.com> wrote:
Have you pushed your changes to git at git.bioconductor.org:packages/BUScorrect and waited for a successful nightly build http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/ ? On 09/03/2018 07:10 AM, Xiangyu Luo wrote:
Dear All, The citation information of my "BUScorrect" R package is shown as an R package version (e.g., xxx, xxx, R package version 0.99.10.), but I want
it
to be my original paper (e.g., xxx, xxx, JournalName). I tried to manually insert the "CITATION" file in the "inst" folder, as described in
It works if the package is installed locally. However, when the package
is
installed from the Bioconductor platform, the citation is still the R package version. I am wondering how to change the citation on
Bioconductor?
Many thanks for your great help!
Xiangyu
[[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Levi Waldron http://www.waldronlab.io Associate Professor of Biostatistics CUNY School of Public Health US: +1 646-364-9616 Skype: levi.waldron [[alternative HTML version deleted]]
Dear Martin, Thank you very much for the information! I have pushed my changes, bumped the version, and waited for a successful nightly build, but the citation result did not change. I am wondering whether the CITATION file should be in "inst" folder? Best, Xiangyu On Tue, Sep 4, 2018 at 9:05 PM Martin Morgan <mtmorgan.bioc at gmail.com> wrote:
Have you pushed your changes to git at git.bioconductor.org:packages/BUScorrect and waited for a successful nightly build http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/ ? On 09/03/2018 07:10 AM, Xiangyu Luo wrote:
Dear All, The citation information of my "BUScorrect" R package is shown as an R package version (e.g., xxx, xxx, R package version 0.99.10.), but I want
it
to be my original paper (e.g., xxx, xxx, JournalName). I tried to manually insert the "CITATION" file in the "inst" folder, as described in
It works if the package is installed locally. However, when the package
is
installed from the Bioconductor platform, the citation is still the R package version. I am wondering how to change the citation on
Bioconductor?
Many thanks for your great help!
Xiangyu
[[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Dear Levi, Thanks a lot for your suggestion! I actually have bumped the version number. I am reading the link you shared to see whether I made mistakes somewhere. Best regards, Xiangyu On Tue, Sep 4, 2018 at 9:18 PM Levi Waldron <lwaldron.research at gmail.com> wrote:
And don't forget to bump your version number, and to check that the new version number is reflected at the bioc-devel landing page. You will have to do a separate commit to the release branch if you want to add the citation to release before the next release cycle (I assume this is an allowable change to the release branch): https://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/ On Tue, Sep 4, 2018 at 9:05 AM Martin Morgan <mtmorgan.bioc at gmail.com> wrote:
Have you pushed your changes to git at git.bioconductor.org:packages/BUScorrect and waited for a successful nightly build http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/ ? On 09/03/2018 07:10 AM, Xiangyu Luo wrote:
Dear All, The citation information of my "BUScorrect" R package is shown as an R package version (e.g., xxx, xxx, R package version 0.99.10.), but I
want
it
to be my original paper (e.g., xxx, xxx, JournalName). I tried to manually insert the "CITATION" file in the "inst" folder, as described in
.
It works if the package is installed locally. However, when the package
is
installed from the Bioconductor platform, the citation is still the R package version. I am wondering how to change the citation on
Bioconductor?
Many thanks for your great help!
Xiangyu
[[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
-- Levi Waldron http://www.waldronlab.io Associate Professor of Biostatistics CUNY School of Public Health US: +1 646-364-9616 Skype: levi.waldron [[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
after I
git clone git at git.bioconductor.org:packages/BUScorrect
This is the log that I see
BUScorrect master$ git log --name-only -n 2
commit 5ccfa7ce4f665f3ffbc55b26a5cd81beaafd3293
Author: Xiangyu Luo <xyluo1991 at gmail.com>
Date: Fri Aug 31 19:10:32 2018 +0800
version bump
DESCRIPTION
commit 1a61e2971a7cc213704797b99c5447847332b39f
Author: Xiangyu Luo <xyluo1991 at gmail.com>
Date: Tue Aug 28 21:45:34 2018 +0800
version bump to 0.99.9
DESCRIPTION
BUScorrect master$ ls inst/
NEWS.Rd unitTests
Are you sure that you have added the citation file to your local git
repository, and pushed the local repository to git.bioconductor.org?
On 09/05/2018 06:15 AM, Xiangyu Luo wrote:
Dear Martin,
Thank you very much for the information! I have pushed my changes,
bumped the version, and waited for a successful nightly build, but the
citation result did not change.? I am wondering whether the CITATION
file should be in "inst" folder?
Best,
Xiangyu
On Tue, Sep 4, 2018 at 9:05 PM Martin Morgan <mtmorgan.bioc at gmail.com
<mailto:mtmorgan.bioc at gmail.com>> wrote:
Have you pushed your changes to
git at git.bioconductor.org:packages/BUScorrect and waited for a
successful
nightly build
http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/
?
On 09/03/2018 07:10 AM, Xiangyu Luo wrote:
> Dear All,
>
> The citation information of my "BUScorrect" R package is shown as
an R
> package version (e.g., xxx, xxx, R package version 0.99.10.), but
I want it
> to be my original paper (e.g., xxx, xxx, JournalName).
>
> I tried to manually insert the "CITATION" file in the "inst"
folder, as
> described in
>
> It works if the package is installed locally. However, when the
package is
> installed from the Bioconductor platform, the citation is still the R
> package version.? I am wondering how to change the citation on
Bioconductor?
>
> Many thanks for your great help!
>
> Xiangyu
>
>? ? ? ?[[alternative HTML version deleted]]
>
> _______________________________________________
> Bioc-devel at r-project.org <mailto:Bioc-devel at r-project.org>
mailing list
Dear Martin, For version 0.9.9, I inserted a CITATION into the "inst", but it did not work. Therefore, in version 0.9.10, I took the CITATION file out of the "inst", but it still did not work. Thank you so much for your patience and guidance! Best regards, Xiangyu On Wed, Sep 5, 2018 at 6:20 PM Martin Morgan <mtmorgan.bioc at gmail.com> wrote:
after I
git clone git at git.bioconductor.org:packages/BUScorrect
This is the log that I see
BUScorrect master$ git log --name-only -n 2
commit 5ccfa7ce4f665f3ffbc55b26a5cd81beaafd3293
Author: Xiangyu Luo <xyluo1991 at gmail.com>
Date: Fri Aug 31 19:10:32 2018 +0800
version bump
DESCRIPTION
commit 1a61e2971a7cc213704797b99c5447847332b39f
Author: Xiangyu Luo <xyluo1991 at gmail.com>
Date: Tue Aug 28 21:45:34 2018 +0800
version bump to 0.99.9
DESCRIPTION
BUScorrect master$ ls inst/
NEWS.Rd unitTests
Are you sure that you have added the citation file to your local git
repository, and pushed the local repository to git.bioconductor.org?
On 09/05/2018 06:15 AM, Xiangyu Luo wrote:
Dear Martin,
Thank you very much for the information! I have pushed my changes,
bumped the version, and waited for a successful nightly build, but the
citation result did not change. I am wondering whether the CITATION
file should be in "inst" folder?
Best,
Xiangyu
On Tue, Sep 4, 2018 at 9:05 PM Martin Morgan <mtmorgan.bioc at gmail.com
<mailto:mtmorgan.bioc at gmail.com>> wrote:
Have you pushed your changes to
git at git.bioconductor.org:packages/BUScorrect and waited for a
successful
nightly build
http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/
?
On 09/03/2018 07:10 AM, Xiangyu Luo wrote:
> Dear All,
>
> The citation information of my "BUScorrect" R package is shown as
an R
> package version (e.g., xxx, xxx, R package version 0.99.10.), but
I want it
> to be my original paper (e.g., xxx, xxx, JournalName).
>
> I tried to manually insert the "CITATION" file in the "inst"
folder, as
> described in
>
> It works if the package is installed locally. However, when the
package is
> installed from the Bioconductor platform, the citation is still
the R
> package version. I am wondering how to change the citation on
Bioconductor?
>
> Many thanks for your great help!
>
> Xiangyu
>
> [[alternative HTML version deleted]]
>
> _______________________________________________
> Bioc-devel at r-project.org <mailto:Bioc-devel at r-project.org>
mailing list
Please note, there is no CITATION file anywhere in your repository! Verify this for yourself, if you like, by changing to a temporary location and making a new clone of your package git clone git at git.bioconductor.org:pacakges/BUScorrect You have not added it to your local repository, or not committed the change to your local repository, or not pushed the commit successfully to the Bioconductor git repository. Why not try to add the CITATION file back to inst/, and show what you do to add, commit, and push your changes. Remember that you must update the repository at the remote git.bioconductor.org. Martin
On 09/05/2018 06:26 AM, Xiangyu Luo wrote:
Dear Martin,
For version 0.9.9, I inserted a CITATION into the "inst", but it did not
work. Therefore, in version 0.9.10, I took the CITATION file out of the
"inst", but it still did not work. Thank you so much for your patience
and guidance!
Best regards,
Xiangyu
On Wed, Sep 5, 2018 at 6:20 PM Martin Morgan <mtmorgan.bioc at gmail.com
<mailto:mtmorgan.bioc at gmail.com>> wrote:
after I
? ?git clone git at git.bioconductor.org:packages/BUScorrect
This is the log that I see
BUScorrect master$ git log --name-only -n 2
commit 5ccfa7ce4f665f3ffbc55b26a5cd81beaafd3293
Author: Xiangyu Luo <xyluo1991 at gmail.com <mailto:xyluo1991 at gmail.com>>
Date:? ?Fri Aug 31 19:10:32 2018 +0800
? ? ?version bump
DESCRIPTION
commit 1a61e2971a7cc213704797b99c5447847332b39f
Author: Xiangyu Luo <xyluo1991 at gmail.com <mailto:xyluo1991 at gmail.com>>
Date:? ?Tue Aug 28 21:45:34 2018 +0800
? ? ?version bump to 0.99.9
DESCRIPTION
BUScorrect master$ ls inst/
NEWS.Rd? unitTests
Are you sure that you have added the citation file to your local git
repository, and pushed the local repository to git.bioconductor.org
<http://git.bioconductor.org>?
On 09/05/2018 06:15 AM, Xiangyu Luo wrote:
> Dear Martin,
>
> Thank you very much for the information! I have pushed my changes,
> bumped the version, and waited for a successful nightly build,
but the
> citation result did not change.? I am wondering whether the CITATION
> file should be in "inst" folder?
>
> Best,
>
> Xiangyu
>
>
>
> On Tue, Sep 4, 2018 at 9:05 PM Martin Morgan
<mtmorgan.bioc at gmail.com <mailto:mtmorgan.bioc at gmail.com>
> <mailto:mtmorgan.bioc at gmail.com
<mailto:mtmorgan.bioc at gmail.com>>> wrote:
>
>? ? ?Have you pushed your changes to
>? ? ?git at git.bioconductor.org:packages/BUScorrect and waited for a
>? ? ?successful
>? ? ?nightly build
>
> http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/
>
>? ? ??
>
>? ? ?On 09/03/2018 07:10 AM, Xiangyu Luo wrote:
>? ? ? > Dear All,
>? ? ? >
>? ? ? > The citation information of my "BUScorrect" R package is
shown as
>? ? ?an R
>? ? ? > package version (e.g., xxx, xxx, R package version
0.99.10.), but
>? ? ?I want it
>? ? ? > to be my original paper (e.g., xxx, xxx, JournalName).
>? ? ? >
>? ? ? > I tried to manually insert the "CITATION" file in the "inst"
>? ? ?folder, as
>? ? ? > described in
>? ? ? >
>
>? ? ? > It works if the package is installed locally. However,
when the
>? ? ?package is
>? ? ? > installed from the Bioconductor platform, the citation is
still the R
>? ? ? > package version.? I am wondering how to change the citation on
>? ? ?Bioconductor?
>? ? ? >
>? ? ? > Many thanks for your great help!
>? ? ? >
>? ? ? > Xiangyu
>? ? ? >
>? ? ? >? ? ? ?[[alternative HTML version deleted]]
>? ? ? >
>? ? ? > _______________________________________________
>? ? ? > Bioc-devel at r-project.org <mailto:Bioc-devel at r-project.org>
<mailto:Bioc-devel at r-project.org <mailto:Bioc-devel at r-project.org>>
>? ? ?mailing list
>? ? ? > https://stat.ethz.ch/mailman/listinfo/bioc-devel
>? ? ? >
>
Dear Martin, I greatly appreciate your super kind help! I will fix that very carefully. Thank you so much! Best regards with many thanks! Xiangyu On Wed, Sep 5, 2018 at 7:37 PM Martin Morgan <mtmorgan.bioc at gmail.com> wrote:
Please note, there is no CITATION file anywhere in your repository! Verify this for yourself, if you like, by changing to a temporary location and making a new clone of your package git clone git at git.bioconductor.org:pacakges/BUScorrect You have not added it to your local repository, or not committed the change to your local repository, or not pushed the commit successfully to the Bioconductor git repository. Why not try to add the CITATION file back to inst/, and show what you do to add, commit, and push your changes. Remember that you must update the repository at the remote git.bioconductor.org. Martin On 09/05/2018 06:26 AM, Xiangyu Luo wrote:
Dear Martin,
For version 0.9.9, I inserted a CITATION into the "inst", but it did not
work. Therefore, in version 0.9.10, I took the CITATION file out of the
"inst", but it still did not work. Thank you so much for your patience
and guidance!
Best regards,
Xiangyu
On Wed, Sep 5, 2018 at 6:20 PM Martin Morgan <mtmorgan.bioc at gmail.com
<mailto:mtmorgan.bioc at gmail.com>> wrote:
after I
git clone git at git.bioconductor.org:packages/BUScorrect
This is the log that I see
BUScorrect master$ git log --name-only -n 2
commit 5ccfa7ce4f665f3ffbc55b26a5cd81beaafd3293
Author: Xiangyu Luo <xyluo1991 at gmail.com <mailto:xyluo1991 at gmail.com
Date: Fri Aug 31 19:10:32 2018 +0800
version bump
DESCRIPTION
commit 1a61e2971a7cc213704797b99c5447847332b39f
Author: Xiangyu Luo <xyluo1991 at gmail.com <mailto:xyluo1991 at gmail.com
Date: Tue Aug 28 21:45:34 2018 +0800
version bump to 0.99.9
DESCRIPTION
BUScorrect master$ ls inst/
NEWS.Rd unitTests
Are you sure that you have added the citation file to your local git
repository, and pushed the local repository to git.bioconductor.org
<http://git.bioconductor.org>?
On 09/05/2018 06:15 AM, Xiangyu Luo wrote:
> Dear Martin,
>
> Thank you very much for the information! I have pushed my changes,
> bumped the version, and waited for a successful nightly build,
but the
> citation result did not change. I am wondering whether the
CITATION
> file should be in "inst" folder?
>
> Best,
>
> Xiangyu
>
>
>
> On Tue, Sep 4, 2018 at 9:05 PM Martin Morgan
<mtmorgan.bioc at gmail.com <mailto:mtmorgan.bioc at gmail.com>
> <mailto:mtmorgan.bioc at gmail.com
<mailto:mtmorgan.bioc at gmail.com>>> wrote:
>
> Have you pushed your changes to
> git at git.bioconductor.org:packages/BUScorrect and waited for a
> successful
> nightly build
>
>
>
> ?
>
> On 09/03/2018 07:10 AM, Xiangyu Luo wrote:
> > Dear All,
> >
> > The citation information of my "BUScorrect" R package is
shown as
> an R
> > package version (e.g., xxx, xxx, R package version
0.99.10.), but
> I want it
> > to be my original paper (e.g., xxx, xxx, JournalName).
> >
> > I tried to manually insert the "CITATION" file in the
"inst"
> folder, as
> > described in
> >
>
> > It works if the package is installed locally. However,
when the
> package is
> > installed from the Bioconductor platform, the citation is
still the R
> > package version. I am wondering how to change the
citation on
> Bioconductor?
> >
> > Many thanks for your great help!
> >
> > Xiangyu
> >
> > [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > Bioc-devel at r-project.org <mailto:Bioc-devel at r-project.org>
<mailto:Bioc-devel at r-project.org <mailto:Bioc-devel at r-project.org>>
> mailing list
>
Also remember if you are referring to the Citation that appears on the landing pages - packages are built once a day and the landing page could take up to 2 days to reflect the CITATION change after you push changes to the git.bioconductor.org server with a valid version bump. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Martin Morgan <mtmorgan.bioc at gmail.com>
Sent: Wednesday, September 5, 2018 7:37:54 AM
To: Xiangyu Luo
Cc: bioc-devel at r-project.org
Subject: Re: [Bioc-devel] Change the citation of my Bioconductor R package "BUScorrect"
Sent: Wednesday, September 5, 2018 7:37:54 AM
To: Xiangyu Luo
Cc: bioc-devel at r-project.org
Subject: Re: [Bioc-devel] Change the citation of my Bioconductor R package "BUScorrect"
Please note, there is no CITATION file anywhere in your repository! Verify this for yourself, if you like, by changing to a temporary location and making a new clone of your package git clone git at git.bioconductor.org:pacakges/BUScorrect You have not added it to your local repository, or not committed the change to your local repository, or not pushed the commit successfully to the Bioconductor git repository. Why not try to add the CITATION file back to inst/, and show what you do to add, commit, and push your changes. Remember that you must update the repository at the remote git.bioconductor.org. Martin On 09/05/2018 06:26 AM, Xiangyu Luo wrote: > Dear Martin, > > For version 0.9.9, I inserted a CITATION into the "inst", but it did not > work. Therefore, in version 0.9.10, I took the CITATION file out of the > "inst", but it still did not work. Thank you so much for your patience > and guidance! > > Best regards, > > Xiangyu > > On Wed, Sep 5, 2018 at 6:20 PM Martin Morgan <mtmorgan.bioc at gmail.com > <mailto:mtmorgan.bioc at gmail.com>> wrote: > > after I > > git clone git at git.bioconductor.org:packages/BUScorrect > > This is the log that I see > > BUScorrect master$ git log --name-only -n 2 > commit 5ccfa7ce4f665f3ffbc55b26a5cd81beaafd3293 > Author: Xiangyu Luo <xyluo1991 at gmail.com <mailto:xyluo1991 at gmail.com>> > Date: Fri Aug 31 19:10:32 2018 +0800 > > version bump > > DESCRIPTION > > commit 1a61e2971a7cc213704797b99c5447847332b39f > Author: Xiangyu Luo <xyluo1991 at gmail.com <mailto:xyluo1991 at gmail.com>> > Date: Tue Aug 28 21:45:34 2018 +0800 > > version bump to 0.99.9 > > DESCRIPTION > > BUScorrect master$ ls inst/ > NEWS.Rd unitTests > > > Are you sure that you have added the citation file to your local git > repository, and pushed the local repository to git.bioconductor.org > <http://git.bioconductor.org>? > > On 09/05/2018 06:15 AM, Xiangyu Luo wrote: > > Dear Martin, > > > > Thank you very much for the information! I have pushed my changes, > > bumped the version, and waited for a successful nightly build, > but the > > citation result did not change. I am wondering whether the CITATION > > file should be in "inst" folder? > > > > Best, > > > > Xiangyu > > > > > > > > On Tue, Sep 4, 2018 at 9:05 PM Martin Morgan > <mtmorgan.bioc at gmail.com <mailto:mtmorgan.bioc at gmail.com> > > <mailto:mtmorgan.bioc at gmail.com > <mailto:mtmorgan.bioc at gmail.com>>> wrote: > > > > Have you pushed your changes to > > git at git.bioconductor.org:packages/BUScorrect and waited for a > > successful > > nightly build > > > > http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/ > > > > ? > > > > On 09/03/2018 07:10 AM, Xiangyu Luo wrote: > > > Dear All, > > > > > > The citation information of my "BUScorrect" R package is > shown as > > an R > > > package version (e.g., xxx, xxx, R package version > 0.99.10.), but > > I want it > > > to be my original paper (e.g., xxx, xxx, JournalName). > > > > > > I tried to manually insert the "CITATION" file in the "inst" > > folder, as > > > described in > > > > > > https://cran.r-project.org/doc/manuals/r-release/R-exts.html#CITATION-files. > > > It works if the package is installed locally. However, > when the > > package is > > > installed from the Bioconductor platform, the citation is > still the R > > > package version. I am wondering how to change the citation on > > Bioconductor? > > > > > > Many thanks for your great help! > > > > > > Xiangyu > > > > > > [[alternative HTML version deleted]] > > > > > > _______________________________________________ > > > Bioc-devel at r-project.org <mailto:Bioc-devel at r-project.org> > <mailto:Bioc-devel at r-project.org <mailto:Bioc-devel at r-project.org>> > > mailing list > > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > > > _______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
Thank you very much for the information, Lori! Best regards with many thanks! Xiangyu On Wed, Sep 5, 2018 at 7:45 PM Shepherd, Lori <Lori.Shepherd at roswellpark.org> wrote:
Also remember if you are referring to the Citation that appears on the landing pages - packages are built once a day and the landing page could take up to 2 days to reflect the CITATION change after you push changes to the git.bioconductor.org server with a valid version bump. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ------------------------------ *From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Martin Morgan <mtmorgan.bioc at gmail.com> *Sent:* Wednesday, September 5, 2018 7:37:54 AM *To:* Xiangyu Luo *Cc:* bioc-devel at r-project.org *Subject:* Re: [Bioc-devel] Change the citation of my Bioconductor R package "BUScorrect" Please note, there is no CITATION file anywhere in your repository! Verify this for yourself, if you like, by changing to a temporary location and making a new clone of your package git clone git at git.bioconductor.org:pacakges/BUScorrect You have not added it to your local repository, or not committed the change to your local repository, or not pushed the commit successfully to the Bioconductor git repository. Why not try to add the CITATION file back to inst/, and show what you do to add, commit, and push your changes. Remember that you must update the repository at the remote git.bioconductor.org. Martin On 09/05/2018 06:26 AM, Xiangyu Luo wrote:
Dear Martin,
For version 0.9.9, I inserted a CITATION into the "inst", but it did not
work. Therefore, in version 0.9.10, I took the CITATION file out of the
"inst", but it still did not work. Thank you so much for your patience
and guidance!
Best regards,
Xiangyu
On Wed, Sep 5, 2018 at 6:20 PM Martin Morgan <mtmorgan.bioc at gmail.com
<mailto:mtmorgan.bioc at gmail.com <mtmorgan.bioc at gmail.com>>> wrote:
after I
git clone git at git.bioconductor.org:packages/BUScorrect
This is the log that I see
BUScorrect master$ git log --name-only -n 2
commit 5ccfa7ce4f665f3ffbc55b26a5cd81beaafd3293
Author: Xiangyu Luo <xyluo1991 at gmail.com <mailto:xyluo1991 at gmail.com
<xyluo1991 at gmail.com>>>
Date: Fri Aug 31 19:10:32 2018 +0800
version bump
DESCRIPTION
commit 1a61e2971a7cc213704797b99c5447847332b39f
Author: Xiangyu Luo <xyluo1991 at gmail.com <mailto:xyluo1991 at gmail.com
<xyluo1991 at gmail.com>>>
Date: Tue Aug 28 21:45:34 2018 +0800
version bump to 0.99.9
DESCRIPTION
BUScorrect master$ ls inst/
NEWS.Rd unitTests
Are you sure that you have added the citation file to your local git
repository, and pushed the local repository to git.bioconductor.org
<http://git.bioconductor.org>?
On 09/05/2018 06:15 AM, Xiangyu Luo wrote:
> Dear Martin,
>
> Thank you very much for the information! I have pushed my changes,
> bumped the version, and waited for a successful nightly build,
but the
> citation result did not change. I am wondering whether the
CITATION
> file should be in "inst" folder?
>
> Best,
>
> Xiangyu
>
>
>
> On Tue, Sep 4, 2018 at 9:05 PM Martin Morgan
<mtmorgan.bioc at gmail.com <mailto:mtmorgan.bioc at gmail.com
<mtmorgan.bioc at gmail.com>>
> <mailto:mtmorgan.bioc at gmail.com
<mailto:mtmorgan.bioc at gmail.com <mtmorgan.bioc at gmail.com>>>> wrote:
>
> Have you pushed your changes to
> git at git.bioconductor.org:packages/BUScorrect and waited for a
> successful
> nightly build
>
>
>
> ?
>
> On 09/03/2018 07:10 AM, Xiangyu Luo wrote:
> > Dear All,
> >
> > The citation information of my "BUScorrect" R package is
shown as
> an R
> > package version (e.g., xxx, xxx, R package version
0.99.10.), but
> I want it
> > to be my original paper (e.g., xxx, xxx, JournalName).
> >
> > I tried to manually insert the "CITATION" file in the
"inst"
> folder, as
> > described in
> >
>
> > It works if the package is installed locally. However,
when the
> package is
> > installed from the Bioconductor platform, the citation is
still the R
> > package version. I am wondering how to change the
citation on
> Bioconductor?
> >
> > Many thanks for your great help!
> >
> > Xiangyu
> >
> > [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > Bioc-devel at r-project.org <mailto:Bioc-devel at r-project.org
<Bioc-devel at r-project.org>>
<mailto:Bioc-devel at r-project.org <mailto:Bioc-devel at r-project.org
<Bioc-devel at r-project.org>>>
> mailing list
>
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