Thank you for your support. I have confirmed that the MSEADbi devel library() message shows "it is deprecated and AHPathBankDbs is the replacement". https://www.bioconductor.org/packages/devel/bioc/vignettes/MSEADbi/inst/doc/MSEADbi.html#makemseapackage Regards, Kozo -- Kozo Nishida knishida at riken.jp Laboratory for Biologically Inspired Computing 6-2-3, Furuedai, Suita, Osaka 565-0874, JAPAN RIKEN Center for Biosystems Dynamics Research On Fri, Feb 26, 2021 at 7:16 AM Kern, Lori
<Lori.Shepherd at roswellpark.org> wrote:
Thank you for letting us know. I will begin the deprecation process for the package. Cheers Get Outlook for iOS
________________________________ From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Kozo Nishida <kozo.nishida at gmail.com> Sent: Thursday, February 25, 2021 5:00:18 PM To: bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: [Bioc-devel] What should I do if I need to ask my package to be deprecated? Hello, Can I ask my package MSEADbi to be deprecated? https://secure-web.cisco.com/1k5L1s41pbEp75fIRd4yxYx_PXFvf0mnOmvT3o9wrlyM2u5K44MTwvZGR0ecC7aq0qlIhu2AOJZyW4xgaE8jQnyQFkVh_kJsvSxYvel4QuHY523awMKvXW6CCCo8nBb9fq_MYZlzjRlk6SK92nT_HB7FjV8XW_dhTSBVr-DMOa09kbkuF8-DpnsC98vX0m3ayjN9RQE7996hI5PD4Bvx8IhqzOL3N269jq5Bp1Z1IeaiFrRsAfaMnEMJLHkG1be7quWjcFCY6al6VYsPY5nqvK3M7QezQVHaf1Mpvj-ynzXbmjBGXLApvVDT9y1SZ84Wa/https%3A%2F%2Fbioconductor.org%2Fpackages%2Frelease%2Fbioc%2Fhtml%2FMSEADbi.html I have developed an alternative (AnnotationHub) package to MSEADbi (called AHPathbankDbs https://secure-web.cisco.com/1ZVXn-bPXajcvw-mLAqfJ-0ANAP2YqH2SByLRfbYC_R26MiFH9X5qZZOdIQEiTD8NgdStmAZI-b4r1H4hikpzJ3LOdqJzn1VzLplVuSh7aytveMf3wqkrPHO4_ADXEQRk477wrwYopoaagBJRvBS-E2t89EEW5vUKL17VPRY8lIwjOQunZ0X9N7v1pmSyT0iLovKRbFWH8mYTJ1z8X0vbV97D5dMFYwYxw61J-fYMBaiFjBz8is-OrnN78jO202GmKTer1Bls-Ee_DTf9ICQlVFEL6qsXEgiMeoK0AdVl4JUvX9ao7tnkuh5oTT8ZuBZ8/https%3A%2F%2Fgithub.com%2FBioconductor%2FContributions%2Fissues%2F1825 ) So the MSEADbi package will not be maintained. MSEADbi is not AnnotationHub package and the implementation style is not up to date. I was unaware of the existence of the AnnotationHub package when I developed MSEADbi. What kind of procedure should I take in such a case? Thanks, Kozo Nishida _______________________________________________ Bioc-devel at r-project.org mailing list https://secure-web.cisco.com/1MVEj7ecvVIN7LSBBcKQ9Qan9XkOy4-14NEAP_JD_Fx6A-fwTkmqiWtYmreTNIzD9CjhacZjXAqz90SHDdslJl4eoQfVUwEa2X_UCH4NZxPoGW2H4xtJCSyirWuU_vuci2fdYHykiGU4Oezp-Y_DNqSCr_PoWtVJ7xB3fieSxvMJ025fEEap2gBe9CdiKc5kFs9PF6HBbneDQlKJOhrXvIPZB5CqTGFHNNOvwG0VVP6FUY5DjOZUM2V5bRzNzx65S2UVBsgPwyVL9D9RCOM8PIB7nYDOxBFix6bnSO-jlNqYjykyJOefyVUp5KcXr4rDO/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.