Skip to content

[Bioc-devel] BioC 3.4: several package failures traceable to vsn req. R >= 3.4.0?

2 messages · Ramon Diaz-Uriarte, Panagiotis Moulos

Original
Ramon Diaz-Uriarte
# 
Dear All,

Several packages (at least ADaCGH2, snapCGH, tilingArray, cellHTS2) are now
(last 24 to 48 hours?) failing to build in BioC 3.4 in Linux (malbec1) and
Mac OSX (morelia). Looking at the error reports they seem to be due to vsn
not being available. Checking the vsn report
(http://bioconductor.org/checkResults/3.4/bioc-LATEST/vsn) it seems vsn
required R-3.4.0 at the time of the check. However, the new vsn on the svn
repo (v.3.41.8) has

Depends: R (>= 3.0.0), Biobase


So I guess we just need to wait for vsn to be rebuilt? I would normally
just wait quietly, but I am concerned because I think the creation of the
BioC 3.4 release branch is today and release is tomorrow.

Best and apologies for the noise if this issue is known,


R.
Panagiotis Moulos
# 
Hi all,

I would like to add also metaseqR in the list of packages failing to 
build in malbec1 and morelia because of vsn. What would be the most 
appropriate course of action for the maintainers? Wait for vsn to be 
correctly built?

Best regards,

Panagiotis
On 10/17/2016 11:34 AM, Ramon Diaz-Uriarte wrote: