[Bioc-devel] Rgraphviz error in Bioconductor 2.2 build for windows

Hi,
since my package oneChannelGUI suggests Rgraphviz I realized that, in 
Bioconductor 2.2 release, the windows version for Rgraphviz
is not available due to an error in compilation example compilation.

checking examples ... ERROR
Running examples in 'Rgraphviz-Ex.R' failed.
The error most likely occurred in:

### * agwrite

flush(stderr()); flush(stdout())

### Name: agwrite
### Title: A function to write a Ragraph object to a file
### Aliases: agwrite agread
### Keywords: graphs

### ** Examples

V <- letters[1:10]
M <- 1:4
g1 <- randomGraph(V, M, .2)
z <- agopen(g1,"foo",layout=FALSE)

Actually I got around using the Rgraphviz from bioconductor 2.1, but I 
would like to know if it will be possible to fix the error.
Cheers
Raffaele

Hi,
since my package oneChannelGUI suggests Rgraphviz I realized that, in 
Bioconductor 2.2 release, the windows version for Rgraphviz
is not available due to an error in compilation example compilation.

checking examples ... ERROR
Running examples in 'Rgraphviz-Ex.R' failed.
The error most likely occurred in:

### * agwrite

flush(stderr()); flush(stdout())

### Name: agwrite
### Title: A function to write a Ragraph object to a file
### Aliases: agwrite agread
### Keywords: graphs

### ** Examples

V <- letters[1:10]
M <- 1:4
g1 <- randomGraph(V, M, .2)
z <- agopen(g1,"foo",layout=FALSE)

Actually I got around using the Rgraphviz from bioconductor 2.1, but I 
would like to know if it will be possible to fix the error.
Cheers
Raffaele

This is usually a symptom of a version mismatch between the version of 
graphviz used to build Rgraphviz, and the version of graphviz found when 
Rgraphviz is loaded.

My guess is that you have graphviz 2.18 installed, but need 2.16.1 to 
match the version used to build windows Rgraphviz available through 
biocLite.

Here's the link to the correct graphviz

http://www.graphviz.org/pub/graphviz/ARCHIVE/graphviz-win-2.16.bin.tar.gz

Martin

rcaloger wrote:

Hi,
since my package oneChannelGUI suggests Rgraphviz I realized that, in 
Bioconductor 2.2 release, the windows version for Rgraphviz
is not available due to an error in compilation example compilation.

checking examples ... ERROR
Running examples in 'Rgraphviz-Ex.R' failed.
The error most likely occurred in:

### * agwrite

flush(stderr()); flush(stdout())

### Name: agwrite
### Title: A function to write a Ragraph object to a file
### Aliases: agwrite agread
### Keywords: graphs

### ** Examples

V <- letters[1:10]
M <- 1:4
g1 <- randomGraph(V, M, .2)
z <- agopen(g1,"foo",layout=FALSE)

Actually I got around using the Rgraphviz from bioconductor 2.1, but I 
would like to know if it will be possible to fix the error.
Cheers
Raffaele