On 04/25/2014 01:46 PM, Martin Morgan wrote:
On 04/24/2014 01:51 PM, Michael Lawrence wrote:
Agreed. Would be nice if the build system could detect changes to CITATION and update the web page accordingly. Must already happen for DESCRIPTION.
This will be implemented (over the next several weeks).
Dan has implemented this, see e.g., 1. http://bioconductor.org/packages/release/bioc/html/GenomicRanges.html 2. http://bioconductor.org/packages/release/bioc/html/limma.html 3. http://bioconductor.org/packages/release/bioc/html/GenomeInfoDb.html The citations are derived from a CITATION file if it exists (examples 1 and 2) or auto-generated from the DESCRIPTION file (example 3), using the equivalent of print(citation("GenomicRanges"), style="html") with some post-processing to work around bugs in print.bibentry related to parsing strings with embedded escape sequences '%' (example 1). print.bibentry prints the citation, but not for instance citHeader (in example 2). Martin
Martin
On Thu, Apr 24, 2014 at 1:44 PM, Vincent Carey <stvjc at channing.harvard.edu>wrote:
+1. this will be a good motivation for maintainers to get the CITATION entry right. On Thu, Apr 24, 2014 at 3:39 PM, Wolfgang Huber <whuber at embl.de> wrote:
I wonder whether the software that makes the package landing pages (e.g.: http://bioconductor.org/packages/release/bioc/html/minfi.html ) could be tweaked to display the actual citation suggested in a package CITATION
file.
Right now, it says 'To cite this package in a publication, start R and
enter: citation("minfi")'. Which is already a good start, but requires
the
reader to have an R session available, install the package, and type
these
words. Things that could be easily automated, and where there is no
obvious
benefit from having the user do these computations, as their result is
anyway predictable.
What do you think?
Kind regards
Wolfgang
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