[Bioc-devel] R Dependency Warning

If you have compressed data it can be ignored.
4.0.0  is what the package would be released under so I recommend that.


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

Hello,

I'm in the process of submitting two packages to Bioconductor, MOMA and its
associated data package moma.gbmexample. I keep getting this warning about
the R dependency:

* Checking R Version dependency...
    * WARNING: Unless package includes compressed data, remove R
      version dependency

Both packages do have compressed data and I have tried both making the
dependency 4.0.0 and 3.6 but have gotten the error both times. Which is the
correct R version to list as the dependency on the upcoming release
version? Or is this a warning that should be ignored given that I do have
compressed data?

Thank you
Sunny Jones

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it's a warning and you should ignore it. We will try to improve the check. Martin

?On 4/3/20, 2:14 PM, "Bioc-devel on behalf of Sunny Jones" <bioc-devel-bounces at r-project.org on behalf of sunnyjjones at gmail.com> wrote:

    Hello,
    
    I'm in the process of submitting two packages to Bioconductor, MOMA and its
    associated data package moma.gbmexample. I keep getting this warning about
    the R dependency:
    
    * Checking R Version dependency...
        * WARNING: Unless package includes compressed data, remove R
          version dependency
    
    Both packages do have compressed data and I have tried both making the
    dependency 4.0.0 and 3.6 but have gotten the error both times. Which is the
    correct R version to list as the dependency on the upcoming release
    version? Or is this a warning that should be ignored given that I do have
    compressed data?
    
    Thank you
    Sunny Jones
    
    
    _______________________________________________
    Bioc-devel at r-project.org mailing list
    https://stat.ethz.ch/mailman/listinfo/bioc-devel

Hi Sunny,

I would venture a guess and suggest that is about the too fined grained version you defined in the DESCRIPTION file.

I would suggest, that you try to define an R version, which follows the format x.y and not x.y.z. So for you that would be R (>= 4.0).

Hope that works,

Felix

-----Urspr?ngliche Nachricht-----
Von: Bioc-devel <bioc-devel-bounces at r-project.org> Im Auftrag von Sunny Jones
Gesendet: Freitag, 3. April 2020 20:14
An: bioc-devel at r-project.org
Betreff: [Bioc-devel] R Dependency Warning

Hello,

I'm in the process of submitting two packages to Bioconductor, MOMA and its associated data package moma.gbmexample. I keep getting this warning about the R dependency:

* Checking R Version dependency...
    * WARNING: Unless package includes compressed data, remove R
      version dependency

Both packages do have compressed data and I have tried both making the dependency 4.0.0 and 3.6 but have gotten the error both times. Which is the correct R version to list as the dependency on the upcoming release version? Or is this a warning that should be ignored given that I do have compressed data?

Thank you
Sunny Jones


_______________________________________________
Bioc-devel at r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel

Thanks all!
Changing to 4.0 still produced the warning but I'll ignore it as was
recommended.

Sunny

On Fri, Apr 3, 2020 at 2:20 PM Felix Ernst <felix.gm.ernst at outlook.com>
wrote:

Hi Sunny,

I would venture a guess and suggest that is about the too fined grained
version you defined in the DESCRIPTION file.

I would suggest, that you try to define an R version, which follows the
format x.y and not x.y.z. So for you that would be R (>= 4.0).

Hope that works,

Felix

-----Urspr?ngliche Nachricht-----
Von: Bioc-devel <bioc-devel-bounces at r-project.org> Im Auftrag von Sunny
Jones
Gesendet: Freitag, 3. April 2020 20:14
An: bioc-devel at r-project.org
Betreff: [Bioc-devel] R Dependency Warning

Hello,

I'm in the process of submitting two packages to Bioconductor, MOMA and
its associated data package moma.gbmexample. I keep getting this warning
about the R dependency:

* Checking R Version dependency...
    * WARNING: Unless package includes compressed data, remove R
      version dependency

Both packages do have compressed data and I have tried both making the
dependency 4.0.0 and 3.6 but have gotten the error both times. Which is the
correct R version to list as the dependency on the upcoming release
version? Or is this a warning that should be ignored given that I do have
compressed data?

Thank you
Sunny Jones

        [[alternative HTML version deleted]]

_______________________________________________
Bioc-devel at r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel