Dear Florian, I?ve forked the (Bioconductor-mirror) Gviz repository on github and added support to create GeneRegionTracks from EnsDb objects. It works analogously to GeneRegionTracks from TxDb, but provides in addition gene or tx biotypes, gene names and gene models of all (not only protein coding) genes from Ensembl. The problem now is that I can not make a pull request on that repository, as it is read-only? is there an alternative way I could provide the code for you for evaluation? cheers, jo
[Bioc-devel] Gviz: GeneRegionTrack from EnsDb objects
2 messages · Rainer Johannes, Hahne, Florian
Hi Johannes, Great! This is really useful and something I wanted to do since a while. I am doing all of my development on the svn repository. Not sure about the githup clone. If you want to you can just send the files you changes by mail and I will take a look at the diff. FLorian
On 04/11/15 15:55, "Rainer Johannes" <Johannes.Rainer at eurac.edu> wrote:
Dear Florian, I?ve forked the (Bioconductor-mirror) Gviz repository on github and added support to create GeneRegionTracks from EnsDb objects. It works analogously to GeneRegionTracks from TxDb, but provides in addition gene or tx biotypes, gene names and gene models of all (not only protein coding) genes from Ensembl. The problem now is that I can not make a pull request on that repository, as it is read-only? is there an alternative way I could provide the code for you for evaluation? cheers, jo